CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007125.1-P	Field mustard	nucleus	95.22	95.22
CDX73418	Canola	nucleus	90.84	87.69
CDX67619	Canola	nucleus	79.68	77.82
CDY07508	Canola	nucleus	78.88	76.74
CDY51434	Canola	cytosol	9.96	71.43
PGSC0003DMT400082463	Potato	nucleus	66.93	65.88
Solyc04g009550.2.1	Tomato	nucleus	66.53	65.49
VIT_13s0067g03320.t01	Wine grape	nucleus	68.92	65.28
Solyc04g049710.2.1	Tomato	nucleus	68.53	65.15
KRH36276	Soybean	nucleus	67.33	63.77
EES15493	Sorghum	nucleus	64.94	63.67
KRG93030	Soybean	nucleus	66.14	62.88
EES07835	Sorghum	nucleus	63.35	61.87
Zm00001d005102_P001	Maize	mitochondrion	63.35	61.63
Os11t0102600-01	Rice	plasma membrane	62.95	61.0
Os12t0102200-01	Rice	nucleus	62.95	61.0
GSMUA_Achr11P...	Banana	nucleus	63.74	59.93
TraesCS5A01G156800.1	Wheat	nucleus	61.35	59.69
TraesCS5B01G155000.1	Wheat	nucleus	61.35	59.69
TraesCS5D01G162200.1	Wheat	nucleus	61.35	59.69
GSMUA_Achr10P...	Banana	nucleus	62.55	58.36
HORVU5Hr1G049020.1	Barley	plastid	60.56	50.0

Protein Annotations

EnsemblPlants:CDY51435	EnsemblPlantsGene:GSBRNA2T00003467001	Gene3D:1.20.960.40	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR006594	InterPro:LisH	PANTHER:PTHR15431	PFAM:PF16045	PFscan:PS50896	ProteinID:CDY51435
ProteinID:CDY51435.1	SEG:seg	UniParc:UPI0004EDAD1B	UniProt:A0A078IK64	MapMan:13.4.1.2.1	:

Description

BnaA09g54800DBnaA09g54800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IK64]

Coordinates

chrLK032995:+:4155..6219

Molecular Weight (calculated)

28020.3 Da

IEP (calculated)

5.124

GRAVY (calculated)

-0.882

Length

251 amino acids

Sequence
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIANS EGLPPALLGS CNDRARRLHA SPSGRLLSAL VCEYLDWAQL NHTLKVYQPE
101: CNLPKDSWRS ELHDFSSNSG HELNRNGDSK PLLLDVLDGF FKFEALGGGG GSSRRESETE SSSSLDSRNP PRTSSASESL PPQRRSISAS GPTSGYRKEE
201: HSWRYDSEDG SEEVTRASAA LENLQLDRKT RNLTSSWRNV RDGTNEEDGK D

Best Arabidopsis Sequence Match ( AT3G55005.1 )
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIENN EGLPPALLGS CNDRARQLHA SPSGRLLSAL ICEYLDWAQL NHTLKVYQPE
101: CNSAKDSWKS EIRDFSINNG YELNRNEDSR PLLLDVLEGF LKFENMTQVM GGSSRRESET ESSLSLDTRN PPRRSSASDS LPHQRRSVSA SQASGAATSG
201: YRKDESNWRY DTEDMPEEVM RASTALENLQ LDRKTRNLTS SWRNVKDGTS EEEEGKD

Arabidopsis Description

TON1BProtein TONNEAU 1b [Source:UniProtKB/Swiss-Prot;Acc:Q9FQ24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.