Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G155000.1 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS5A01G156800.1 | Wheat | nucleus | 99.22 | 99.22 |
| Os12t0102200-01 | Rice | nucleus | 90.7 | 90.35 |
| Os11t0102600-01 | Rice | plasma membrane | 90.7 | 90.35 |
| EES07835 | Sorghum | nucleus | 85.66 | 85.99 |
| EES15493 | Sorghum | nucleus | 85.27 | 85.94 |
| Zm00001d005102_P001 | Maize | mitochondrion | 85.27 | 85.27 |
| HORVU5Hr1G049020.1 | Barley | plastid | 97.29 | 82.57 |
| KRH36276 | Soybean | nucleus | 71.71 | 69.81 |
| VIT_13s0067g03320.t01 | Wine grape | nucleus | 71.32 | 69.43 |
| Solyc04g049710.2.1 | Tomato | nucleus | 70.54 | 68.94 |
| KRG93030 | Soybean | nucleus | 70.54 | 68.94 |
| CDY51434 | Canola | cytosol | 9.3 | 68.57 |
| GSMUA_Achr10P... | Banana | nucleus | 71.32 | 68.4 |
| PGSC0003DMT400082463 | Potato | nucleus | 67.44 | 68.24 |
| GSMUA_Achr11P... | Banana | nucleus | 70.54 | 68.16 |
| Solyc04g009550.2.1 | Tomato | nucleus | 66.67 | 67.45 |
| CDX67619 | Canola | nucleus | 63.18 | 63.42 |
| Bra003203.1-P | Field mustard | nucleus | 63.18 | 63.42 |
| AT3G55005.1 | Thale cress | nucleus | 62.79 | 63.03 |
| CDY07508 | Canola | nucleus | 62.79 | 62.79 |
| AT3G55000.1 | Thale cress | nucleus | 63.18 | 62.69 |
| CDY51435 | Canola | nucleus | 59.69 | 61.35 |
| Bra007125.1-P | Field mustard | nucleus | 59.3 | 60.96 |
| CDX73418 | Canola | nucleus | 59.3 | 58.85 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G162200.1 | EnsemblPlantsGene:TraesCS5D01G162200 | Gene3D:1.20.960.40 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR006594 | InterPro:LisH | PANTHER:PTHR15431 | PFAM:PF16045 | PFscan:PS50896 | SEG:seg |
| MapMan:13.4.1.2.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:253183150..253186018
Molecular Weight (calculated)
29023.1 Da
IEP (calculated)
5.285
GRAVY (calculated)
-0.860
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDYAREMME LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIEEN EDGGNPALLG SCNDRAKQLH ASPSGRLLTA LIGEYLEWAQ LSHTMKVYLP
101: ECNLPKDFWK NELKDFSNKN GAEGSRSAES GPMLLDVLEG YLKYENLSQT RMAGRRMINS EPEPTLNTEH RNMRRPPSSS SVAGMPPMGR QMPPSQTSDR
201: RGGSSASNTR KDEYNWGYDA DDLSEEVLRT STALENIQLD RKARNLTTSW RHPGNGAE
101: ECNLPKDFWK NELKDFSNKN GAEGSRSAES GPMLLDVLEG YLKYENLSQT RMAGRRMINS EPEPTLNTEH RNMRRPPSSS SVAGMPPMGR QMPPSQTSDR
201: RGGSSASNTR KDEYNWGYDA DDLSEEVLRT STALENIQLD RKARNLTTSW RHPGNGAE
001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIENN EGLPPALLGS CNDRARQLHA SPSGRLLSAL ICEYLDWAQL NHTLKVYQPE
101: CNSAKDSWKS EIRDFSINNG YELNRNEDSR PLLLDVLEGF LKFENMTQVM GGSSRRESET ESSLSLDTRN PPRRSSASDS LPHQRRSVSA SQASGAATSG
201: YRKDESNWRY DTEDMPEEVM RASTALENLQ LDRKTRNLTS SWRNVKDGTS EEEEGKD
101: CNSAKDSWKS EIRDFSINNG YELNRNEDSR PLLLDVLEGF LKFENMTQVM GGSSRRESET ESSLSLDTRN PPRRSSASDS LPHQRRSVSA SQASGAATSG
201: YRKDESNWRY DTEDMPEEVM RASTALENLQ LDRKTRNLTS SWRNVKDGTS EEEEGKD
Arabidopsis Description
TON1BProtein TONNEAU 1b [Source:UniProtKB/Swiss-Prot;Acc:Q9FQ24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.