Factsheet for Zm00001d005102_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d027373_P003
Zm00001d048497_P002
Zm00001d053930_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55000.1	Zm00001d027373_P003	AT3G48750.1	17426018
AT3G55000.1	Zm00001d048497_P002	AT3G48750.1	17426018
AT3G55000.1	Zm00001d053930_P001	AT3G48750.1	17426018

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07835	Sorghum	nucleus	94.57	94.94
EES15493	Sorghum	nucleus	93.41	94.14
Os11t0102600-01	Rice	plasma membrane	89.15	88.8
Os12t0102200-01	Rice	nucleus	89.15	88.8
TraesCS5D01G162200.1	Wheat	nucleus	85.27	85.27
TraesCS5B01G155000.1	Wheat	nucleus	85.27	85.27
TraesCS5A01G156800.1	Wheat	nucleus	84.88	84.88
HORVU5Hr1G049020.1	Barley	plastid	85.66	72.7
CDY51434	Canola	cytosol	9.3	68.57
KRH36276	Soybean	nucleus	70.16	68.3
Solyc04g049710.2.1	Tomato	nucleus	69.77	68.18
KRG93030	Soybean	nucleus	69.77	68.18
VIT_13s0067g03320.t01	Wine grape	nucleus	69.77	67.92
Solyc04g009550.2.1	Tomato	nucleus	66.67	67.45
PGSC0003DMT400082463	Potato	nucleus	65.89	66.67
GSMUA_Achr10P...	Banana	nucleus	68.6	65.8
GSMUA_Achr11P...	Banana	nucleus	67.44	65.17
CDX67619	Canola	nucleus	64.73	64.98
Bra003203.1-P	Field mustard	nucleus	64.73	64.98
CDY07508	Canola	nucleus	64.73	64.73
AT3G55005.1	Thale cress	nucleus	63.57	63.81
CDY51435	Canola	nucleus	61.63	63.35
Bra007125.1-P	Field mustard	nucleus	61.63	63.35
AT3G55000.1	Thale cress	nucleus	63.57	63.08
CDX73418	Canola	nucleus	61.24	60.77

Protein Annotations

EnsemblPlants:Zm00001d005102_P001	EnsemblPlants:Zm00001d005102_T001	EnsemblPlantsGene:Zm00001d005102	EntrezGene:100193953	Gene3D:1.20.960.40	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR006594	InterPro:LisH	PANTHER:PTHR15431	PFAM:PF16045
PFscan:PS50896	ProteinID:ONM20317.1	SEG:seg	UniParc:UPI0002207796	UniProt:A0A1D6EK46	MapMan:13.4.1.2.1

Description

Protein TONNEAU 1b

Coordinates

chr2:-:158273978..158277824

Molecular Weight (calculated)

28851.8 Da

IEP (calculated)

5.495

GRAVY (calculated)

-0.779

Length

258 amino acids

Sequence
(BLAST)

001: MDDYAREMME LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVMEND DGGNPALLGS CNDRAKQLHA SPSGRLLTAL VCEYLEWAQL SHTMKVYLPE
101: CNLPKDFWKN ELKDFSNKSG AEGSRSAESG PLLLDVLEGY LKYENLSQAR MGGRRMMSSE SDPSLNAEHR SMRRAPSASV GNLPPMGRPI SSSQQASDRR
201: GGSSVSNTRK DEYNWRYDTT DDISEEVLRA STALESVQLD RKSRNLPTSW RHSGDGAE

Best Arabidopsis Sequence Match ( AT3G55005.1 )
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIENN EGLPPALLGS CNDRARQLHA SPSGRLLSAL ICEYLDWAQL NHTLKVYQPE
101: CNSAKDSWKS EIRDFSINNG YELNRNEDSR PLLLDVLEGF LKFENMTQVM GGSSRRESET ESSLSLDTRN PPRRSSASDS LPHQRRSVSA SQASGAATSG
201: YRKDESNWRY DTEDMPEEVM RASTALENLQ LDRKTRNLTS SWRNVKDGTS EEEEGKD

Arabidopsis Description

TON1BProtein TONNEAU 1b [Source:UniProtKB/Swiss-Prot;Acc:Q9FQ24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.