CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11866
KRH36887
KRH42252
KRH58370

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55000.1	KRH11866	AT3G48750.1	17426018
AT3G55000.1	KRH36887	AT3G48750.1	17426018
AT3G55000.1	KRH42252	AT3G48750.1	17426018
AT3G55000.1	KRH58370	AT3G48750.1	17426018

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36276	Soybean	nucleus	95.83	95.47
VIT_13s0067g03320.t01	Wine grape	nucleus	82.95	82.64
Solyc04g049710.2.1	Tomato	nucleus	79.17	79.17
PGSC0003DMT400082463	Potato	nucleus	75.76	78.43
Solyc04g009550.2.1	Tomato	nucleus	74.24	76.86
Os12t0102200-01	Rice	nucleus	69.7	71.04
Os11t0102600-01	Rice	plasma membrane	69.7	71.04
TraesCS5D01G162200.1	Wheat	nucleus	68.94	70.54
TraesCS5B01G155000.1	Wheat	nucleus	68.94	70.54
TraesCS5A01G156800.1	Wheat	nucleus	68.94	70.54
Zm00001d005102_P001	Maize	mitochondrion	68.18	69.77
GSMUA_Achr10P...	Banana	nucleus	70.45	69.14
EES15493	Sorghum	nucleus	67.05	69.14
GSMUA_Achr11P...	Banana	nucleus	69.7	68.91
EES07835	Sorghum	nucleus	67.05	68.87
CDY51434	Canola	cytosol	9.09	68.57
CDX67619	Canola	nucleus	65.91	67.7
Bra003203.1-P	Field mustard	nucleus	65.91	67.7
AT3G55005.1	Thale cress	nucleus	65.91	67.7
AT3G55000.1	Thale cress	nucleus	66.67	67.69
CDY07508	Canola	nucleus	65.53	67.05
CDY51435	Canola	nucleus	62.88	66.14
Bra007125.1-P	Field mustard	nucleus	60.98	64.14
CDX73418	Canola	nucleus	62.88	63.85
HORVU5Hr1G049020.1	Barley	plastid	68.56	59.54

Protein Annotations

EMBL:ACUP02012778	EnsemblPlants:KRG93030	EnsemblPlantsGene:GLYMA_20G244200	EntrezGene:100808445	Gene3D:1.20.960.40	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR006594	InterPro:LisH	PANTHER:PTHR15431	PFAM:PF16045
PFscan:PS50896	ProteinID:KRG93030	ProteinID:KRG93030.1	UniParc:UPI000233DE30	UniProt:I1NJ90	MapMan:13.4.1.2.1

Description

hypothetical protein

Coordinates

chr20:+:47433836..47436757

Molecular Weight (calculated)

29857.9 Da

IEP (calculated)

5.717

GRAVY (calculated)

-0.772

Length

264 amino acids

Sequence
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLARIRA ELRASVFEAI EEEDHVIEKE QALPPALLGS CNDRAKQLHA SPPGRLLSAM ICEYLDWAQL SHTLKVYLPE
101: CNLEKDFWKT ELKEFSAKNG YDLNRNRDSP LLLDVLEGFL KLENLSQARA SGRRFTTSEA DPLPNSESRN PRRHSSSSVA GGLPPLGRAV PSSQASDRRG
201: GSSMSAYRKD DYNWRYDRDE LPEDIIQASS ALENLQLDRK ARNLTSSWRH AGDGINEDDG RDHV

Best Arabidopsis Sequence Match ( AT3G55005.1 )
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIENN EGLPPALLGS CNDRARQLHA SPSGRLLSAL ICEYLDWAQL NHTLKVYQPE
101: CNSAKDSWKS EIRDFSINNG YELNRNEDSR PLLLDVLEGF LKFENMTQVM GGSSRRESET ESSLSLDTRN PPRRSSASDS LPHQRRSVSA SQASGAATSG
201: YRKDESNWRY DTEDMPEEVM RASTALENLQ LDRKTRNLTS SWRNVKDGTS EEEEGKD

Arabidopsis Description

TON1BProtein TONNEAU 1b [Source:UniProtKB/Swiss-Prot;Acc:Q9FQ24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.