Factsheet for HORVU5Hr1G049020.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G085830.4
HORVU6Hr1G013680.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55000.1	HORVU4Hr1G085830.4	AT3G48750.1	17426018
AT3G55000.1	HORVU6Hr1G013680.2	AT3G48750.1	17426018

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G162200.1	Wheat	nucleus	82.57	97.29
TraesCS5B01G155000.1	Wheat	nucleus	82.57	97.29
TraesCS5A01G156800.1	Wheat	nucleus	81.91	96.51
Os12t0102200-01	Rice	nucleus	76.64	89.96
Os11t0102600-01	Rice	plasma membrane	76.64	89.96
EES07835	Sorghum	nucleus	73.03	86.38
EES15493	Sorghum	nucleus	72.7	86.33
Zm00001d005102_P001	Maize	mitochondrion	72.7	85.66
VIT_13s0067g03320.t01	Wine grape	nucleus	59.87	68.68
KRH36276	Soybean	nucleus	59.87	68.68
CDY51434	Canola	cytosol	7.89	68.57
Solyc04g049710.2.1	Tomato	nucleus	59.54	68.56
KRG93030	Soybean	nucleus	59.54	68.56
PGSC0003DMT400082463	Potato	nucleus	56.58	67.45
GSMUA_Achr11P...	Banana	nucleus	58.88	67.04
GSMUA_Achr10P...	Banana	nucleus	59.21	66.91
Solyc04g009550.2.1	Tomato	nucleus	55.92	66.67
CDX67619	Canola	nucleus	52.96	62.65
Bra003203.1-P	Field mustard	nucleus	52.96	62.65
AT3G55005.1	Thale cress	nucleus	52.63	62.26
CDY07508	Canola	nucleus	52.63	62.02
AT3G55000.1	Thale cress	nucleus	52.96	61.92
CDY51435	Canola	nucleus	50.0	60.56
Bra007125.1-P	Field mustard	nucleus	49.67	60.16
CDX73418	Canola	nucleus	49.67	58.08

Protein Annotations

EnsemblPlants:HORVU5Hr1G049020.1	EnsemblPlantsGene:HORVU5Hr1G049020	Gene3D:1.20.960.40	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR006594	InterPro:LisH	PANTHER:PTHR15431	PFAM:PF16045	PFscan:PS50896	SEG:seg
SignalP:SignalP-noTM	UniParc:UPI000B4841E5	UniProt:A0A287R4L4	MapMan:13.4.1.2.1	:	:

Description

No Description!

Coordinates

chrchr5H:+:379853153..379856375

Molecular Weight (calculated)

33770.7 Da

IEP (calculated)

6.182

GRAVY (calculated)

-0.804

Length

304 amino acids

Sequence
(BLAST)

001: SLPATLLLPI SLPPLASQGC STSASACPPP RAQKKREEAA RKRGEDMDDY AREMMELKTL VTRTLEKKGV LAKIRAELRA SVFEAIEEED RVIEENEDGG
101: NPALLGSCND RAKQLHASSS GRLLTALIGE YLEWAQLSHT MKVYLPECNL PKDFWKNELK DFSNKNGAEG SRSAESGPML LDVLEGYLKY ENLSQTRMAG
201: RRMVNSESDP TLNTEHRNMR RPPSSSSVAG LPPMGRQMQP SQTSDRRGGS SASNTRKDEY NWGYDADDLS EEVLRTSTAL ENIQLDRKAR NLTTSWRHPG
301: NGAE

Best Arabidopsis Sequence Match ( AT3G55005.1 )
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIENN EGLPPALLGS CNDRARQLHA SPSGRLLSAL ICEYLDWAQL NHTLKVYQPE
101: CNSAKDSWKS EIRDFSINNG YELNRNEDSR PLLLDVLEGF LKFENMTQVM GGSSRRESET ESSLSLDTRN PPRRSSASDS LPHQRRSVSA SQASGAATSG
201: YRKDESNWRY DTEDMPEEVM RASTALENLQ LDRKTRNLTS SWRNVKDGTS EEEEGKD

Arabidopsis Description

TON1BProtein TONNEAU 1b [Source:UniProtKB/Swiss-Prot;Acc:Q9FQ24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.