Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc08g066330.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G55000.1 | Solyc08g066330.1.1 | AT3G48750.1 | 17426018 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g009550.2.1 | Tomato | nucleus | 83.33 | 86.27 |
| VIT_13s0067g03320.t01 | Wine grape | nucleus | 82.58 | 82.26 |
| KRG93030 | Soybean | nucleus | 79.17 | 79.17 |
| KRH36276 | Soybean | nucleus | 78.79 | 78.49 |
| Os12t0102200-01 | Rice | nucleus | 70.45 | 71.81 |
| Os11t0102600-01 | Rice | plasma membrane | 70.45 | 71.81 |
| TraesCS5D01G162200.1 | Wheat | nucleus | 68.94 | 70.54 |
| TraesCS5B01G155000.1 | Wheat | nucleus | 68.94 | 70.54 |
| TraesCS5A01G156800.1 | Wheat | nucleus | 68.94 | 70.54 |
| Bra003203.1-P | Field mustard | nucleus | 68.56 | 70.43 |
| CDX67619 | Canola | nucleus | 68.56 | 70.43 |
| GSMUA_Achr11P... | Banana | nucleus | 71.21 | 70.41 |
| AT3G55000.1 | Thale cress | nucleus | 69.32 | 70.38 |
| GSMUA_Achr10P... | Banana | nucleus | 71.59 | 70.26 |
| AT3G55005.1 | Thale cress | nucleus | 68.18 | 70.04 |
| CDY07508 | Canola | nucleus | 68.18 | 69.77 |
| Zm00001d005102_P001 | Maize | mitochondrion | 68.18 | 69.77 |
| EES15493 | Sorghum | nucleus | 67.42 | 69.53 |
| EES07835 | Sorghum | nucleus | 67.42 | 69.26 |
| CDY51434 | Canola | cytosol | 9.09 | 68.57 |
| CDY51435 | Canola | nucleus | 65.15 | 68.53 |
| Bra007125.1-P | Field mustard | nucleus | 63.64 | 66.93 |
| CDX73418 | Canola | nucleus | 64.77 | 65.77 |
| HORVU5Hr1G049020.1 | Barley | plastid | 68.56 | 59.54 |
Protein Annotations
| EnsemblPlants:Solyc04g049710.2.1 | EnsemblPlantsGene:Solyc04g049710.2 | Gene3D:1.20.960.40 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR006594 | InterPro:LisH | ncoils:Coil | PANTHER:PTHR15431 | PFAM:PF16045 | PFscan:PS50896 |
| SEG:seg | UniParc:UPI0002766822 | UniProt:K4BRU7 | MapMan:13.4.1.2.1 | : | : |
Description
No Description!
Coordinates
chr4:-:43140231..43154339
Molecular Weight (calculated)
29606.5 Da
IEP (calculated)
5.139
GRAVY (calculated)
-0.865
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRTIEKD EGLPPALLGS CNERAKQLHN SPSGRLLTAL ICEYFDWAQL NHSLKVYLPE
101: CNLQKDSWKS ELKEFSSKNG YDLNRNGDSG PLLLDVLEGF LKYENLSQGR GAGRRLTTPD ADSLPNLETR NMRRPSSSSV AGGLPPLGRP GPAAQSSYRR
201: GGSSVSGYRK DEYNWRYDND ELAEDVSRAS SALENLQLDR KARNLTTSWR HGGDGMSEED DRGE
101: CNLQKDSWKS ELKEFSSKNG YDLNRNGDSG PLLLDVLEGF LKYENLSQGR GAGRRLTTPD ADSLPNLETR NMRRPSSSSV AGGLPPLGRP GPAAQSSYRR
201: GGSSVSGYRK DEYNWRYDND ELAEDVSRAS SALENLQLDR KARNLTTSWR HGGDGMSEED DRGE
001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIENN EGPPPALLGS CNDRARKLHA SPSGRLLSAL ICEYLDWAQL NHTLIVYQPE
101: SNLPKDSWKS ELRDFNSNNG FELNRNGDSG PLLLDVLEGF LKFESMTQGM GSSSRRDSET ESSSSLESRN PPRRSSASDS LPPQRRPVSA SQASDRRAGL
201: STSGYRKDEF NWRQGNQDTH EEVTRASAAL ENLQLDRKTR NLTSSWRNVR DGTNEEEGRD
101: SNLPKDSWKS ELRDFNSNNG FELNRNGDSG PLLLDVLEGF LKFESMTQGM GSSSRRDSET ESSSSLESRN PPRRSSASDS LPPQRRPVSA SQASDRRAGL
201: STSGYRKDEF NWRQGNQDTH EEVTRASAAL ENLQLDRKTR NLTSSWRNVR DGTNEEEGRD
Arabidopsis Description
TON1AProtein TONNEAU 1a [Source:UniProtKB/Swiss-Prot;Acc:Q9FQ25]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.