CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04403
KXG40336

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55000.1	EES04403	AT3G48750.1	17426018
AT3G55000.1	KXG40336	AT3G48750.1	17426018

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07835	Sorghum	nucleus	96.88	96.5
Zm00001d005102_P001	Maize	mitochondrion	94.14	93.41
Os12t0102200-01	Rice	nucleus	90.62	89.58
Os11t0102600-01	Rice	plasma membrane	90.62	89.58
TraesCS5D01G162200.1	Wheat	nucleus	85.94	85.27
TraesCS5B01G155000.1	Wheat	nucleus	85.94	85.27
TraesCS5A01G156800.1	Wheat	nucleus	85.55	84.88
HORVU5Hr1G049020.1	Barley	plastid	86.33	72.7
CDY51434	Canola	cytosol	9.77	71.43
VIT_13s0067g03320.t01	Wine grape	nucleus	69.92	67.55
Solyc04g049710.2.1	Tomato	nucleus	69.53	67.42
KRH36276	Soybean	nucleus	69.53	67.17
KRG93030	Soybean	nucleus	69.14	67.05
Solyc04g009550.2.1	Tomato	nucleus	66.02	66.27
PGSC0003DMT400082463	Potato	nucleus	65.62	65.88
GSMUA_Achr10P...	Banana	nucleus	69.14	65.8
Bra007125.1-P	Field mustard	nucleus	64.06	65.34
GSMUA_Achr11P...	Banana	nucleus	67.97	65.17
CDY51435	Canola	nucleus	63.67	64.94
CDY07508	Canola	nucleus	65.23	64.73
AT3G55005.1	Thale cress	nucleus	64.84	64.59
Bra003203.1-P	Field mustard	nucleus	64.84	64.59
CDX67619	Canola	nucleus	64.84	64.59
AT3G55000.1	Thale cress	nucleus	65.23	64.23
CDX73418	Canola	nucleus	63.67	62.69

Protein Annotations

EnsemblPlants:EES15493	EnsemblPlantsGene:SORBI_3008G001100	EntrezGene:8055392	Gene3D:1.20.960.40	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR006594	InterPro:LisH	PANTHER:PTHR15431	PFAM:PF16045	PFscan:PS50896
ProteinID:EES15493	ProteinID:EES15493.1	RefSeq:XP_002441655.1	SEG:seg	unigene:Sbi.14100	UniParc:UPI0001A879C5
UniProt:C5YPQ2	MapMan:13.4.1.2.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:95360..99052

Molecular Weight (calculated)

28648.6 Da

IEP (calculated)

5.491

GRAVY (calculated)

-0.771

Length

256 amino acids

Sequence
(BLAST)

001: MDDYAREMME LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVVEND DGVNPALLGS CNDRAKQLHA SPSGRLLTAL VCEYLEWAQL SHTMKVYLPE
101: CNLPKDFWKN ELKDFSNKSG AEGSRSAESG PMLLDVLEGY LKYENLSQTR MGGRRMMSSE SDTSLNADHR SMRRPPSASV GSLPPMGRPI SSSQASDRRG
201: GPSASNTRKD EYNWRYDADD ISEEVLRASA ALENVQLDRK SRNLPTSWRH SGDGTE

Best Arabidopsis Sequence Match ( AT3G55005.1 )
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIENN EGLPPALLGS CNDRARQLHA SPSGRLLSAL ICEYLDWAQL NHTLKVYQPE
101: CNSAKDSWKS EIRDFSINNG YELNRNEDSR PLLLDVLEGF LKFENMTQVM GGSSRRESET ESSLSLDTRN PPRRSSASDS LPHQRRSVSA SQASGAATSG
201: YRKDESNWRY DTEDMPEEVM RASTALENLQ LDRKTRNLTS SWRNVKDGTS EEEEGKD

Arabidopsis Description

TON1BProtein TONNEAU 1b [Source:UniProtKB/Swiss-Prot;Acc:Q9FQ24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.