Factsheet for Os12t0102200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0123100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55000.1	Os02t0123100-01	AT3G48750.1	17426018

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0102600-01	Rice	plasma membrane	100.0	100.0
TraesCS5D01G162200.1	Wheat	nucleus	90.35	90.7
TraesCS5B01G155000.1	Wheat	nucleus	90.35	90.7
EES07835	Sorghum	nucleus	89.96	90.66
EES15493	Sorghum	nucleus	89.58	90.62
TraesCS5A01G156800.1	Wheat	nucleus	89.96	90.31
Zm00001d005102_P001	Maize	mitochondrion	88.8	89.15
HORVU5Hr1G049020.1	Barley	plastid	89.96	76.64
CDY51434	Canola	cytosol	9.65	71.43
Solyc04g049710.2.1	Tomato	nucleus	71.81	70.45
KRH36276	Soybean	nucleus	71.43	69.81
KRG93030	Soybean	nucleus	71.04	69.7
VIT_13s0067g03320.t01	Wine grape	nucleus	71.04	69.43
Solyc04g009550.2.1	Tomato	nucleus	67.95	69.02
PGSC0003DMT400082463	Potato	nucleus	67.95	69.02
GSMUA_Achr10P...	Banana	nucleus	71.43	68.77
GSMUA_Achr11P...	Banana	nucleus	69.88	67.79
CDX67619	Canola	nucleus	64.48	64.98
Bra003203.1-P	Field mustard	nucleus	64.48	64.98
CDY07508	Canola	nucleus	64.09	64.34
AT3G55000.1	Thale cress	nucleus	63.32	63.08
CDY51435	Canola	nucleus	61.0	62.95
AT3G55005.1	Thale cress	nucleus	62.16	62.65
Bra007125.1-P	Field mustard	nucleus	60.62	62.55
CDX73418	Canola	nucleus	61.0	60.77

Protein Annotations

Gene3D:1.20.960.40	MapMan:13.4.1.2.1	EntrezGene:4351242	ProteinID:ABA91104.1	ProteinID:ABA95575.2	ProteinID:BAF27362.1
ProteinID:BAF28934.1	ProteinID:BAT12275.1	ProteinID:BAT15454.1	ProteinID:EEE52587.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR006594	InterPro:LisH	EnsemblPlantsGene:Os12g0102200	EnsemblPlants:Os12t0102200-01	PFAM:PF16045
PFscan:PS50896	PANTHER:PTHR15431	UniProt:Q2QYY5	UniParc:UPI0000682637	RefSeq:XP_015619785.1	SEG:seg

Description

LisH dimerisation motif domain containing protein. (Os12t0102200-01)

Coordinates

chr12:+:96736..99805

Molecular Weight (calculated)

28893.8 Da

IEP (calculated)

5.495

GRAVY (calculated)

-0.795

Length

259 amino acids

Sequence
(BLAST)

001: MDDYAREMME LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVVEND DGGNPALLGS CNDRAKQLHA SPSGRLLTAL VSEYLEWAQL SHTMKVYLPE
101: CNLPKDFWKN ELKDFSNKSG AEGSRSAESG PMLLDVLEGY LKYENLSQTR MAGTGRRIIN SESDPALNAE HRNTRRPPSS SSVTGLPPMG RPMPSSQMSD
201: RRGGSSASNA RKDEYNWRYD ADDISEEVLR ASSALENVQL DRKARNLTTS WRHPGDGAE

Best Arabidopsis Sequence Match ( AT3G55000.1 )
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIENN EGPPPALLGS CNDRARKLHA SPSGRLLSAL ICEYLDWAQL NHTLIVYQPE
101: SNLPKDSWKS ELRDFNSNNG FELNRNGDSG PLLLDVLEGF LKFESMTQGM GSSSRRDSET ESSSSLESRN PPRRSSASDS LPPQRRPVSA SQASDRRAGL
201: STSGYRKDEF NWRQGNQDTH EEVTRASAAL ENLQLDRKTR NLTSSWRNVR DGTNEEEGRD

Arabidopsis Description

TON1AProtein TONNEAU 1a [Source:UniProtKB/Swiss-Prot;Acc:Q9FQ25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.