CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68497
CDX83047
CDX87018
CDY05870
CDY66197
CDY67496

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55000.1	CDX68497	AT3G48750.1	17426018
AT3G55000.1	CDX83047	AT3G48750.1	17426018
AT3G55000.1	CDX87018	AT3G48750.1	17426018
AT3G55000.1	CDY05870	AT3G48750.1	17426018
AT3G55000.1	CDY66197	AT3G48750.1	17426018
AT3G55000.1	CDY67496	AT3G48750.1	17426018

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67619	Canola	nucleus	98.45	98.83
AT3G55000.1	Thale cress	nucleus	84.88	84.23
AT3G55005.1	Thale cress	nucleus	82.17	82.49
CDY51435	Canola	nucleus	76.74	78.88
CDX73418	Canola	nucleus	79.46	78.85
CDY51434	Canola	cytosol	9.69	71.43
PGSC0003DMT400082463	Potato	nucleus	69.77	70.59
Solyc04g009550.2.1	Tomato	nucleus	68.99	69.8
Solyc04g049710.2.1	Tomato	nucleus	69.77	68.18
VIT_13s0067g03320.t01	Wine grape	nucleus	69.77	67.92
KRH36276	Soybean	nucleus	68.6	66.79
KRG93030	Soybean	nucleus	67.05	65.53
EES15493	Sorghum	nucleus	64.73	65.23
Zm00001d005102_P001	Maize	mitochondrion	64.73	64.73
Os11t0102600-01	Rice	plasma membrane	64.34	64.09
Os12t0102200-01	Rice	nucleus	64.34	64.09
EES07835	Sorghum	nucleus	63.57	63.81
GSMUA_Achr10P...	Banana	nucleus	65.5	62.83
TraesCS5A01G156800.1	Wheat	nucleus	62.79	62.79
TraesCS5B01G155000.1	Wheat	nucleus	62.79	62.79
TraesCS5D01G162200.1	Wheat	nucleus	62.79	62.79
GSMUA_Achr11P...	Banana	nucleus	63.57	61.42
HORVU5Hr1G049020.1	Barley	plastid	62.02	52.63

Protein Annotations

EnsemblPlants:CDY07508	EnsemblPlantsGene:GSBRNA2T00124519001	Gene3D:1.20.960.40	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR006594	InterPro:LisH	ncoils:Coil	PANTHER:PTHR15431	PFAM:PF16045	PFscan:PS50896
ProteinID:CDY07508	ProteinID:CDY07508.1	SEG:seg	SMART:SM00667	UniParc:UPI0004EE7E38	UniProt:A0A078F7B4
MapMan:13.4.1.2.1	:	:	:	:	:

Description

BnaC06g15560DBnaC06g15560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F7B4]

Coordinates

chrLK031979:-:72973..75207

Molecular Weight (calculated)

29134.8 Da

IEP (calculated)

5.128

GRAVY (calculated)

-0.936

Length

258 amino acids

Sequence
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIENN EGLPPALLGS CNDRARQLHA LPSGRLLCAL VCEYLEWAQL DHTLKVYQPE
101: CNLQKDSWKS ELSDFSSNHG YELNRNGDSA PLLLDVLEGF LKFESMTQNM GGGNSRRESE TESSSSLDSR NPPRRSSASD NLPPLRRTGS GSQGSDRRGG
201: TNYRKDEINW RHGNQDAHEE VMRASAALEN LQLDRKTRNM TSSWRNVRDG ASEDDGRD

Best Arabidopsis Sequence Match ( AT3G55000.1 )
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIENN EGPPPALLGS CNDRARKLHA SPSGRLLSAL ICEYLDWAQL NHTLIVYQPE
101: SNLPKDSWKS ELRDFNSNNG FELNRNGDSG PLLLDVLEGF LKFESMTQGM GSSSRRDSET ESSSSLESRN PPRRSSASDS LPPQRRPVSA SQASDRRAGL
201: STSGYRKDEF NWRQGNQDTH EEVTRASAAL ENLQLDRKTR NLTSSWRNVR DGTNEEEGRD

Arabidopsis Description

TON1AProtein TONNEAU 1a [Source:UniProtKB/Swiss-Prot;Acc:Q9FQ25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.