CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04403
KXG40336

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55000.1	EES04403	AT3G48750.1	17426018
AT3G55000.1	KXG40336	AT3G48750.1	17426018

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15493	Sorghum	nucleus	96.5	96.88
Zm00001d005102_P001	Maize	mitochondrion	94.94	94.57
Os12t0102200-01	Rice	nucleus	90.66	89.96
Os11t0102600-01	Rice	plasma membrane	90.66	89.96
TraesCS5D01G162200.1	Wheat	nucleus	85.99	85.66
TraesCS5B01G155000.1	Wheat	nucleus	85.99	85.66
TraesCS5A01G156800.1	Wheat	nucleus	85.6	85.27
HORVU5Hr1G049020.1	Barley	plastid	86.38	73.03
CDY51434	Canola	cytosol	9.73	71.43
VIT_13s0067g03320.t01	Wine grape	nucleus	69.65	67.55
Solyc04g049710.2.1	Tomato	nucleus	69.26	67.42
KRH36276	Soybean	nucleus	69.26	67.17
KRG93030	Soybean	nucleus	68.87	67.05
Solyc04g009550.2.1	Tomato	nucleus	65.76	66.27
PGSC0003DMT400082463	Potato	nucleus	65.37	65.88
GSMUA_Achr10P...	Banana	nucleus	68.87	65.8
GSMUA_Achr11P...	Banana	nucleus	67.32	64.79
CDX67619	Canola	nucleus	63.81	63.81
Bra003203.1-P	Field mustard	nucleus	63.81	63.81
Bra007125.1-P	Field mustard	nucleus	62.26	63.74
CDY07508	Canola	nucleus	63.81	63.57
AT3G55000.1	Thale cress	nucleus	64.2	63.46
CDY51435	Canola	nucleus	61.87	63.35
AT3G55005.1	Thale cress	nucleus	63.03	63.03
CDX73418	Canola	nucleus	61.87	61.15

Protein Annotations

EnsemblPlants:EES07835	EnsemblPlantsGene:SORBI_3005G000800	EntrezGene:8079951	Gene3D:1.20.960.40	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR006594	InterPro:LisH	PANTHER:PTHR15431	PFAM:PF16045	PFscan:PS50896
ProteinID:EES07835	ProteinID:EES07835.1	RefSeq:XP_002448847.1	SEG:seg	UniParc:UPI0001A862DD	UniProt:C5Y2M2
MapMan:13.4.1.2.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:71646..76127

Molecular Weight (calculated)

28692.6 Da

IEP (calculated)

5.495

GRAVY (calculated)

-0.761

Length

257 amino acids

Sequence
(BLAST)

001: MDDYAREMME LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVVEND DGGNPALLGS CNDRAKQLHA SPSGRLLTAL VCEYLEWAQL SHTMKVYLPE
101: CNLPKDFWKN ELKDFSNKSG AEGSRSAESG PMLLDVLEGY LKYENLSQTR MGGRRMMSSE SDPSLTAEHR SMRRPPSASV GSLPPMGRPI SSLQASDRRG
201: GSSASNNTRK DEYNWRYDAD DISEEVLRAS AALESVQLDR KSRNLPTSWR HSGDGSE

Best Arabidopsis Sequence Match ( AT3G55000.1 )
(BLAST)

001: MDDYTREMMD LKTLVTRTLE KKGVLAKIRA ELRASVFEAI EEEDRVIENN EGPPPALLGS CNDRARKLHA SPSGRLLSAL ICEYLDWAQL NHTLIVYQPE
101: SNLPKDSWKS ELRDFNSNNG FELNRNGDSG PLLLDVLEGF LKFESMTQGM GSSSRRDSET ESSSSLESRN PPRRSSASDS LPPQRRPVSA SQASDRRAGL
201: STSGYRKDEF NWRQGNQDTH EEVTRASAAL ENLQLDRKTR NLTSSWRNVR DGTNEEEGRD

Arabidopsis Description

TON1AProtein TONNEAU 1a [Source:UniProtKB/Swiss-Prot;Acc:Q9FQ25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.