CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047755_P006	Maize	plastid	85.97	84.44
Os03t0286200-01	Rice	plastid	80.26	77.44
TraesCS4D01G198400.1	Wheat	plastid	78.7	75.94
TraesCS4A01G106500.1	Wheat	plastid	78.7	75.94
HORVU4Hr1G057140.3	Barley	plastid	77.66	74.94
TraesCS4A01G106600.1	Wheat	plastid	69.87	67.76
TraesCS4D01G198200.1	Wheat	plastid	69.87	67.59
TraesCS4B01G197700.1	Wheat	plastid	69.87	67.59
GSMUA_Achr10P...	Banana	cytosol	60.26	66.67
GSMUA_Achr6P15520_001	Banana	cytosol	57.4	65.0
HORVU4Hr1G057130.1	Barley	cytosol	15.32	62.11
KRG89060	Soybean	plastid	61.82	61.82
CDY28030	Canola	plastid	60.26	61.7
KRH24944	Soybean	plastid	49.61	61.61
CDY35951	Canola	plastid	60.26	61.21
Bra029665.1-P	Field mustard	plastid	60.26	61.21
AT3G07630.3	Thale cress	plastid	59.74	60.37
CDX74036	Canola	plastid	58.96	59.89
PGSC0003DMT400065276	Potato	plastid	61.56	59.85
Bra001262.1-P	Field mustard	plastid	58.7	59.63
CDY07984	Canola	plastid	58.44	59.37
VIT_06s0004g03430.t01	Wine grape	plastid	59.48	59.02
Solyc11g072520.1.1	Tomato	plastid	59.22	58.02
EER96348	Sorghum	plastid	52.99	46.58
EES10725	Sorghum	plastid	51.95	46.3
OQU92273	Sorghum	plastid	37.66	34.69

Protein Annotations

KEGG:00400+4.2.1.51	Gene3D:3.30.70.260	Gene3D:3.40.190.10	MapMan:4.1.5.2.4	EntrezGene:8081446	InterPro:ACT_dom
UniProt:C5WNL7	EnsemblPlants:EER95050	ProteinID:EER95050	ProteinID:EER95050.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004664	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009094
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016597	GO:GO:0016829
GO:GO:0047769	InterPro:IPR001086	InterPro:IPR002912	PFAM:PF00800	ScanProsite:PS00857	ScanProsite:PS00858
PFscan:PS51171	PFscan:PS51671	PANTHER:PTHR21022	PANTHER:PTHR21022:SF3	MetaCyc:PWY-7432	InterPro:Preph_deHydtase
InterPro:Preph_deHydtase_CS	EnsemblPlantsGene:SORBI_3001G410000	SUPFAM:SSF53850	SUPFAM:SSF55021	unigene:Sbi.8965	UniParc:UPI0001A8304C
RefSeq:XP_002468052.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:69351562..69356490

Molecular Weight (calculated)

41830.0 Da

IEP (calculated)

7.034

GRAVY (calculated)

-0.194

Length

385 amino acids

Sequence
(BLAST)

001: MAPTACLRLP FLPARARSAT ATATPFSPPR RLSLKCSATN GDNSNPNYIS ISPGVESVDV NGLRRPPAPV STPTVPGARD PNWLPRPLTS ADAMEADGKG
101: LKVAYQGCAG AYSEAAAKKA YPNCETVPCE HFDTAFQAVQ NWVADRAVLP LENSLGGSIH RNYDLLLRHS LHIVGEVRLA VRHCLLANPG VKIENLKSAM
201: SHPQALAQCE HTLTGLGIEH REAVDDTAGA AKIVAEHMLQ DTGAIASSLA AKLYGLDVLA ENIQDDKDNV TRFMLLAREP IIPRTDKPFK TSIVFSLEEG
301: PGQLFKALAV FALREINLTK IESRPHKERP LRDCSSLLKN FDYLFYVDLE ASMADPKTQN ALGNLKEFAT FLRVLGSYPV DVNEP

Best Arabidopsis Sequence Match ( AT3G07630.3 )
(BLAST)

001: MAMHTVRLSP ATQLHGGISS NLSPPNRKPN NSIVRYGCGS SKRFRIVTVL ASLRENDANG RDNSVRAMEV KKIFEDSPLL PKPLSSNQLT ESVSNGSRVR
101: VAYQGVRGAY SESAAEKAYP NCEAVPCEEF DTAFEAVERW LVDRAVLPIE NSLGGSIHRN YDLLLRHNLH IVGEVKLAVR HCLLANHGVN IEDLRRVLSH
201: PQALAQCENT LTKLGLVREA VDDTAGAAKQ IAFENLNDAA AVASEKAAKI YGLNIVAKDI QDDCDNVTRF LMLAREPIIP GTNRLFKTSI VFSLEEGPGV
301: LFKALAVFAL RQINLTKIES RPLRKHPLRA SGGLKYFDYL FYVDFEASMA DEVAQNALRH LEEFATFLRV LGSYPVDTTM L

Arabidopsis Description

ADT2Arogenate dehydratase/prephenate dehydratase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SSE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.