Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G001700.1 | Barley | cytosol, nucleus | 79.81 | 90.61 |
| TraesCS1B01G021700.1 | Wheat | cytosol | 53.65 | 55.47 |
| HORVU1Hr1G001610.1 | Barley | cytosol | 49.23 | 51.1 |
| HORVU1Hr1G001690.1 | Barley | cytosol | 49.23 | 51.1 |
| HORVU1Hr1G001600.1 | Barley | cytosol | 28.08 | 50.52 |
| HORVU1Hr1G055270.1 | Barley | cytosol | 32.12 | 49.41 |
| HORVU1Hr1G001680.1 | Barley | cytosol | 24.81 | 47.25 |
| TraesCS1A01G017600.1 | Wheat | cytosol | 48.27 | 46.05 |
| HORVU2Hr1G099740.1 | Barley | cytosol, peroxisome, plastid, vacuole | 19.81 | 35.52 |
| HORVU2Hr1G098560.1 | Barley | cytosol, peroxisome | 23.65 | 32.37 |
| HORVU2Hr1G099720.1 | Barley | cytosol | 29.62 | 31.05 |
| HORVU1Hr1G084670.1 | Barley | cytosol | 30.0 | 30.77 |
| HORVU3Hr1G011030.1 | Barley | cytosol | 25.19 | 30.05 |
| Os11t0278300-00 | Rice | cytosol | 25.19 | 29.24 |
| HORVU3Hr1G011300.1 | Barley | cytosol | 24.23 | 28.7 |
| HORVU0Hr1G017830.1 | Barley | cytosol | 28.85 | 28.25 |
| HORVU6Hr1G094220.1 | Barley | cytosol | 16.92 | 28.21 |
| HORVU4Hr1G087220.1 | Barley | cytosol, peroxisome | 23.46 | 26.7 |
| HORVU1Hr1G091250.1 | Barley | nucleus | 25.96 | 26.52 |
| HORVU4Hr1G066650.2 | Barley | cytosol | 13.65 | 24.91 |
| HORVU1Hr1G091220.1 | Barley | cytosol | 21.73 | 21.08 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G001580.1 | EnsemblPlantsGene:HORVU1Hr1G001580 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:DUF247_pln |
| PANTHER:PTHR31549 | PANTHER:PTHR31549:SF32 | PFAM:PF03140 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B47A8B3 |
| UniProt:A0A287EFK5 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:3705134..3706696
Molecular Weight (calculated)
59430.1 Da
IEP (calculated)
5.061
GRAVY (calculated)
-0.230
Length
520 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMEPWSWVV TCDPGCWSME ETAAACSSDN RISFQTSLPS HSDSGMQLQV VEYAATATAT ATHDICSETV QVFEEVTQVF NDNYLVIMKD KMHKFPPSLG
101: DVPDWWKVSA TVAIGPYYHG TPGLLEAEQV KHSAANQCIR DSPVASLQEM YNAVFAVLPD ALNLYYQDEL AKFRHDDLLP MMFIDACFLV QFMRWYYLPE
201: GDMHQALESY FSANYERICT DIMMLENQIP WVVVKTIFNL MPPAPSPWLS PWERFVIVMR RGLGNQVGPE DNIDVDPEYH PPHVLGLIWH YIVRNNNHHG
301: DDDDEEDDHN NEDDDNDNDK DDDDKQKPLS ISVAELAAIG ITLVPTRKEW KAGLMSMRLK KKPRCFFVFG DLEVRPLYLS EGNAAWLVNM AAFELCKTPD
401: FQSDHVHDRD SAVCSYLHLF AMLLDQQQDV HELQKEHLIE GGGLTSKMTL HFFASIGKNM RPGTFYLRII MRIEKFRNDR SRLLRCILFL KRKRAKVMAL
501: ISIIAAVVGI LSSLQALKPH
101: DVPDWWKVSA TVAIGPYYHG TPGLLEAEQV KHSAANQCIR DSPVASLQEM YNAVFAVLPD ALNLYYQDEL AKFRHDDLLP MMFIDACFLV QFMRWYYLPE
201: GDMHQALESY FSANYERICT DIMMLENQIP WVVVKTIFNL MPPAPSPWLS PWERFVIVMR RGLGNQVGPE DNIDVDPEYH PPHVLGLIWH YIVRNNNHHG
301: DDDDEEDDHN NEDDDNDNDK DDDDKQKPLS ISVAELAAIG ITLVPTRKEW KAGLMSMRLK KKPRCFFVFG DLEVRPLYLS EGNAAWLVNM AAFELCKTPD
401: FQSDHVHDRD SAVCSYLHLF AMLLDQQQDV HELQKEHLIE GGGLTSKMTL HFFASIGKNM RPGTFYLRII MRIEKFRNDR SRLLRCILFL KRKRAKVMAL
501: ISIIAAVVGI LSSLQALKPH
001: MADKTDIISS SSDKASPPPP SAFRNYLSSG SKEPVLLLES AGKESCCIFR VPESFVALNP KAYKPKVVSI GPYHYGEKHL QMIQQHKPRL LQLFLDEAKK
101: KDVEENVLVK AVVDLEDKIR KSYSEELKTG HDLMFMMVLD GCFILMVFLI MSGNIELSED PIFSIPWLLS SIQSDLLLLE NQVPFFVLQT LYVGSKIGVS
201: SDLNRIAFHF FKNPIDKEGS YWEKHRNYKA KHLLDLIRET FLPNTSESDK ASSPHVQVQL HEGKSGNVPS VDSKAVPLIL SAKRLRLQGI KFRLRRSKED
301: SILNVRLKKN KLQIPQLRFD GFISSFFLNC VAFEQFYTDS SNEITTYIVF MGCLLNNEED VTFLRNDKLI IENHFGSNNE VSEFFKTISK DVVFEVDTSY
401: LNNVFKGVNE YTKKWYNGLW AGFRHTHFES PWTFLSSCAV LFVILLTMLQ STVAILSYLN DKKGNGNAAP PPLGLP
101: KDVEENVLVK AVVDLEDKIR KSYSEELKTG HDLMFMMVLD GCFILMVFLI MSGNIELSED PIFSIPWLLS SIQSDLLLLE NQVPFFVLQT LYVGSKIGVS
201: SDLNRIAFHF FKNPIDKEGS YWEKHRNYKA KHLLDLIRET FLPNTSESDK ASSPHVQVQL HEGKSGNVPS VDSKAVPLIL SAKRLRLQGI KFRLRRSKED
301: SILNVRLKKN KLQIPQLRFD GFISSFFLNC VAFEQFYTDS SNEITTYIVF MGCLLNNEED VTFLRNDKLI IENHFGSNNE VSEFFKTISK DVVFEVDTSY
401: LNNVFKGVNE YTKKWYNGLW AGFRHTHFES PWTFLSSCAV LFVILLTMLQ STVAILSYLN DKKGNGNAAP PPLGLP
Arabidopsis Description
UPF0481 protein At3g47200 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD53]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.