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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 3
  • cytosol 1
  • mitochondrion 1
  • nucleus 2
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:plasma membrane, plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4A01G026800.1 Wheat cytosol 49.71 50.91
HORVU3Hr1G011030.1 Barley cytosol 37.72 44.04
HORVU3Hr1G011300.1 Barley cytosol 36.74 42.6
TraesCS2B01G601000.1 Wheat cytosol 34.97 41.59
HORVU6Hr1G094220.1 Barley cytosol 24.95 40.71
HORVU0Hr1G017830.1 Barley cytosol 42.44 40.68
HORVU4Hr1G066650.2 Barley cytosol 22.59 40.35
Os11t0278300-00 Rice cytosol 34.58 39.29
HORVU2Hr1G098560.1 Barley cytosol, peroxisome 26.52 35.53
HORVU4Hr1G087220.1 Barley cytosol, peroxisome 31.63 35.23
HORVU1Hr1G084670.1 Barley cytosol 34.38 34.52
HORVU2Hr1G099740.1 Barley cytosol, peroxisome, plastid, vacuole 18.86 33.1
HORVU2Hr1G099720.1 Barley cytosol 31.83 32.66
HORVU1Hr1G001690.1 Barley cytosol 28.88 29.34
HORVU1Hr1G001610.1 Barley cytosol 28.88 29.34
HORVU1Hr1G091220.1 Barley cytosol 30.84 29.29
HORVU1Hr1G001600.1 Barley cytosol 16.5 29.07
HORVU1Hr1G001700.1 Barley cytosol, nucleus 25.93 28.82
HORVU1Hr1G001680.1 Barley cytosol 15.32 28.57
HORVU1Hr1G055270.1 Barley cytosol 17.88 26.92
HORVU1Hr1G001580.1 Barley nucleus 26.52 25.96
Protein Annotations
EnsemblPlants:HORVU1Hr1G091250.1EnsemblPlantsGene:HORVU1Hr1G091250GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:DUF247_pln
PANTHER:PTHR31549PANTHER:PTHR31549:SF32PFAM:PF03140SEG:segTMHMM:TMhelixUniParc:UPI0002952552
UniProt:M0X5X2MapMan:35.1::::
Description
No Description!
Coordinates
chrchr1H:-:547777417..547779556
Molecular Weight (calculated)
57337.8 Da
IEP (calculated)
8.805
GRAVY (calculated)
-0.153
Length
509 amino acids
Sequence
(BLAST)
001: MVTRMSGSNR KKKVMERISA TSSIKKRKGK GGHGKGRRHE KAPAQDLEKA AKESDTDFDE VAAVGRISQE TGLAEEPDTD VDRDTHYHFV LEMNRAAEDF
101: EIDFEKMQSK MPRFPASLKG VGTSYVAPRV VAIGPYHNPL YSLGNGKSNY LVEMEEVKRV AASHFIKKSG HSFLEIRAKV ESVASDPHKF YNIGSESLPD
201: FVSMMCVDGC FLLQYMLICT ARDELPSSLL YFFESNQAYI SNDIMLLENQ LPWVVLHTLW SLRPSVNVGE FIGKMGRTLQ VSGDKVSEPF AWDGTNEPPH
301: LLGLLWLYKT GGSVNAEPQS EELRPMSKTI SAIELAEMGI KLTASKTTKF TDMGIKRRPV LADKIFLAPL LLDEVRSCWL VNMAAFEVSM AKGIQNPIVC
401: SYLAVLAMLM DREEDVHKLR SKRLVQGELT NKETLDFFKA IIKHISGGPL YINILEEIES YKSKRWFWIK VHKFVYKNIK TIVTVVSIAL SIFALLVALF
501: KVLLSIKEH
Best Arabidopsis Sequence Match ( AT3G47250.1 )
(BLAST)
001: MEDETRSTSS LSDIAISIID EGPLSPLRQR SERSVVSHIK RNLQSSGKPL ILLESAGKAS CCIFRIPDSL AEVNPKAYKP KVVSIGPYHY GENHLQMIQQ
101: HKFRFLELFV DRATKKGMDE NVLYAAVGAL QHKIRASYSE ELRIEKSELV SMMILDGCFI LMLLLIVSRK IDLDMNKDPI FTIPWILASI QSDLLLLENQ
201: VPFFVLRTIF DKSGIGSPGD LNRMAFSFFN LSIDKPDTYW AKHRDRGAKH LLDLNRKTFI PSMRSMGESE TTPSSKFQHS KGKSGEVSSS ESTFPLILSA
301: KRLRLQGIKF RLRSDAESIL DIKLKKNKLQ IPLLRLDGFI SSIFLNCVAF EQFYTESTND ITSYVVFMGC LLNDQEDATF LNNDKRIIEN YFGNENEVSQ
401: FFKTICKDVV FDTRRSYLRN VFEGVNEYTS KTYNGVWAGF RHTHFESPWT ALSSFAVVFV ILLTMTQAAY AIRSYYHDTE
Arabidopsis Description
Transmembrane protein, putative (DUF247) [Source:UniProtKB/TrEMBL;Acc:Q9SD48]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.