Factsheet for HORVU4Hr1G002820.15

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G015900.2	Wheat	nucleus	93.82	94.15
TraesCS4B01G017400.1	Wheat	nucleus	93.46	93.79
TraesCS4A01G296200.1	Wheat	nucleus	93.29	93.62
KXG37885	Sorghum	nucleus	85.16	86.69
Zm00001d033451_P004	Maize	nucleus	84.45	85.51
Zm00001d013603_P006	Maize	nucleus	83.04	82.46
Os03t0663700-01	Rice	nucleus	40.28	78.35
VIT_07s0151g00590.t01	Wine grape	nucleus	65.19	66.13
GSMUA_Achr5P02940_001	Banana	nucleus	56.89	65.98
GSMUA_Achr4P21240_001	Banana	cytosol	54.77	65.4
KRH32792	Soybean	cytosol	30.57	65.28
GSMUA_Achr7P01420_001	Banana	nucleus	56.54	64.65
KRH67243	Soybean	nucleus	62.9	63.91
KRG95566	Soybean	nucleus	63.07	63.86
VIT_05s0020g03770.t01	Wine grape	cytosol, mitochondrion, nucleus	63.6	63.49
KRH32041	Soybean	nucleus	62.19	62.97
KRH71395	Soybean	nucleus	61.31	61.96
Solyc09g065480.1.1	Tomato	nucleus	60.78	61.43
PGSC0003DMT400049726	Potato	nucleus	60.6	61.25
HORVU4Hr1G073350.1	Barley	cytosol, mitochondrion, nucleus	62.19	60.48
AT3G63240.2	Thale cress	nucleus	58.3	60.33
KRG91335	Soybean	nucleus	61.31	60.03
GSMUA_Achr2P17460_001	Banana	nucleus	54.42	59.92
CDY15360	Canola	nucleus	59.01	59.86
GSMUA_Achr7P07740_001	Banana	cytosol	53.36	59.68
KRH77819	Soybean	nucleus	60.95	59.59
CDY15542	Canola	nucleus	57.6	59.49
KRH27671	Soybean	nucleus	60.6	59.24
CDY10113	Canola	nucleus	58.3	59.14
CDY47282	Canola	nucleus	58.3	59.03
KRH35494	Soybean	nucleus	61.13	58.94
Bra021766.1-P	Field mustard	nucleus	59.72	58.58
CDX86576	Canola	nucleus	57.77	58.29
HORVU5Hr1G104620.10	Barley	nucleus	61.66	58.26
CDY60962	Canola	cytosol, golgi, nucleus	59.54	58.0
AT2G32010.3	Thale cress	nucleus	60.78	57.91
CDX76691	Canola	cytosol, mitochondrion, nucleus	56.54	57.04
Bra007737.1-P	Field mustard	mitochondrion	57.42	56.82
Solyc09g082370.2.1	Tomato	nucleus	62.54	56.73
CDY56450	Canola	mitochondrion	56.18	56.58
PGSC0003DMT400082071	Potato	nucleus	62.37	56.57
PGSC0003DMT400042059	Potato	nucleus	59.19	56.21
Bra015428.1-P	Field mustard	nucleus	57.6	55.92
Solyc06g054010.2.1	Tomato	nucleus	57.77	55.14
AT1G05470.2	Thale cress	nucleus	59.54	54.62
Bra030611.1-P	Field mustard	nucleus	59.01	53.53
HORVU4Hr1G023500.2	Barley	nucleus, plastid	38.52	39.14
HORVU3Hr1G079850.4	Barley	cytosol	38.69	37.63
HORVU6Hr1G075060.26	Barley	nucleus	38.69	35.96
HORVU4Hr1G064440.3	Barley	cytosol, nucleus	32.69	34.71
HORVU1Hr1G068860.1	Barley	endoplasmic reticulum, plastid	38.16	32.78
HORVU3Hr1G020880.11	Barley	cytosol	33.22	29.75
HORVU1Hr1G080460.7	Barley	cytosol, golgi, mitochondrion, plastid	34.98	29.03
HORVU3Hr1G067840.2	Barley	cytosol	36.57	28.99

Protein Annotations

EnsemblPlants:HORVU4Hr1G002820.15	EnsemblPlantsGene:HORVU4Hr1G002820	Gene3D:3.60.10.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0046856	InterPro:Endo/exonu/phosph_ase_sf
InterPro:Endo/exonuclease/phosphatase	InterPro:IPPc	InterPro:IPR036691	PANTHER:PTHR11200	PANTHER:PTHR11200:SF151	PFAM:PF03372
SMART:SM00128	SUPFAM:SSF56219	UniParc:UPI000B480F74	UniProt:A0A287MXS9	MapMan:27.5.4.1	:

Description

No Description!

Coordinates

chrchr4H:+:5368900..5373607

Molecular Weight (calculated)

64860.6 Da

IEP (calculated)

9.122

GRAVY (calculated)

-0.659

Length

566 amino acids

Sequence
(BLAST)

001: MRDETPTKNR LSWSKTIVRK WFNIKTKAKD FHSDYGVEEV GMQWRTSFSE RDVCKTKKSR TERGCPGRTR IEIVEQETES TAPTSQTRRT TGMVFAGTWN
101: VGGRSPSSHL NLEDWLNTSP AADIYVIGFQ EIVPLNAGNV LLTEDNGPAK KWVSLVRKTL NNLDLQGPAA YNYHTPSPAP EPIAELNVDF ERSSRRQKNS
201: SFFHRRSFQS LGRSSRIDMM DPHSLVDRRF SVCDRISFGS RPSDVDTSMR CGGSSDDENM DEESPGGTFF SPMPCGYGAP LCTDDNNRRL VNSNRYCLVA
301: SKQMVGVFLM VWVRNDIREH VKNLKVSCVG RGLMGYLGNK GSISISMSVH QTSFCFVCTH LTSGQKDGDE LRRNADVVEI LRKTRFPHAH GARDEKSPEA
401: ILDHDRIIWL GDLNYRIALS YRSVKALVEM HNWKQLLEKD QLRIEQRFGR VFAGWKEGRI YFPPTYKYSY NSDRYAGDDM HPNEKRRTPA WCDRILWYGR
501: GLNQLCYVRG ESRFSDHRPV YSIFTAEVKL PSQAQFGSFT RSSSLMGVDE LPYPTYPRSY TDINFY

Best Arabidopsis Sequence Match ( AT2G32010.1 )
(BLAST)

001: MRDDKTKKSK LSWSKKMVRK WFNIKSKTEK FQADVSLPQG VEVEHRNSFS EREPCTIKKS KTEKLNKNWE QQARQRKMNY ENPRIIDVQN HSIFVATWNV
101: AGRSPPEDLN LDEWLHSSAP ADIYVLGFQE IVPLNAGNVL GAEDNGPAKK WHSLIRKTLN NLPGASSACH TPSPIPVPIA EIDADFSGSS RQKNETFFNR
201: RSFQTPSVWS MEENDPSISQ PRLDRRFSVC DRVFFSHRPS DFDPSFRCGH RPSDYSRRPS DYSRPSDYYS RPSNYSRPSD VSRWGSSDDD NGPGDSPSTF
301: LNSPGSFLGS AANENGYRTP WNSSQYCLVA SKQMVGIFLT IWVKSELREH VKNMKVSCVG RGLMGYLGNK GSISISMLLH QTSFCFVCTH LTSGQKEGDE
401: LRRNSDVMEI LKKTRFPRVQ SSADEKSPEN ILQHDRVIWL GDLNYRIALS YRSAKALVEM QNWRALLEND QLRIEQKRGH VFKGWNEGKI YFPPTYKYSN
501: NSDRYAGGDL HPKEKRRTPA WCDRILWHGE GLHQLSYVRG ESRFSDHRPV YGIFSAEVES NHKRSKRTNS HSTARVEAEE LLPYARGYTE LTFF

Arabidopsis Description

IP5P7CVL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VNT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.