Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15542 | Canola | nucleus | 96.61 | 98.91 |
| CDY10113 | Canola | nucleus | 90.73 | 91.22 |
| CDY47282 | Canola | nucleus | 90.37 | 90.7 |
| AT1G05470.2 | Thale cress | nucleus | 94.65 | 86.06 |
| CDY15360 | Canola | nucleus | 84.85 | 85.3 |
| CDY60962 | Canola | cytosol, golgi, nucleus | 84.49 | 81.58 |
| KRG91335 | Soybean | nucleus | 75.4 | 73.18 |
| VIT_05s0020g03770.t01 | Wine grape | cytosol, mitochondrion, nucleus | 73.8 | 73.02 |
| KRH35494 | Soybean | nucleus | 75.94 | 72.57 |
| KRH77819 | Soybean | nucleus | 74.33 | 72.02 |
| KRH27671 | Soybean | nucleus | 73.8 | 71.5 |
| KRH32792 | Soybean | cytosol | 32.62 | 69.06 |
| VIT_07s0151g00590.t01 | Wine grape | nucleus | 68.45 | 68.82 |
| GSMUA_Achr5P02940_001 | Banana | nucleus | 58.11 | 66.8 |
| GSMUA_Achr7P01420_001 | Banana | nucleus | 57.58 | 65.25 |
| GSMUA_Achr4P21240_001 | Banana | cytosol | 54.9 | 64.98 |
| KRH32041 | Soybean | nucleus | 64.71 | 64.94 |
| Solyc09g082370.2.1 | Tomato | nucleus | 71.66 | 64.42 |
| PGSC0003DMT400082071 | Potato | nucleus | 71.66 | 64.42 |
| KRH71395 | Soybean | nucleus | 64.17 | 64.29 |
| PGSC0003DMT400042059 | Potato | nucleus | 67.38 | 63.42 |
| Solyc09g065480.1.1 | Tomato | nucleus | 63.28 | 63.39 |
| PGSC0003DMT400049726 | Potato | nucleus | 63.1 | 63.21 |
| KRG95566 | Soybean | nucleus | 62.92 | 63.15 |
| KRH67243 | Soybean | nucleus | 62.57 | 63.02 |
| GSMUA_Achr2P08860_001 | Banana | cytosol | 48.13 | 62.65 |
| Solyc06g054010.2.1 | Tomato | nucleus | 65.95 | 62.39 |
| Os03t0793600-00 | Rice | nucleus | 61.85 | 61.42 |
| GSMUA_Achr2P17460_001 | Banana | nucleus | 56.15 | 61.28 |
| GSMUA_Achr7P07740_001 | Banana | cytosol | 54.72 | 60.67 |
| GSMUA_Achr8P26780_001 | Banana | endoplasmic reticulum | 54.55 | 60.47 |
| Os07t0175900-01 | Rice | cytosol | 61.14 | 60.18 |
| EER93309 | Sorghum | nucleus | 60.43 | 60.11 |
| EER98050 | Sorghum | cytosol | 60.78 | 59.93 |
| GSMUA_Achr3P14960_001 | Banana | nucleus | 56.33 | 59.74 |
| TraesCS5B01G434000.1 | Wheat | nucleus | 59.89 | 59.47 |
| TraesCS5D01G439900.1 | Wheat | nucleus | 59.71 | 59.29 |
| Zm00001d013090_P002 | Maize | nucleus | 59.89 | 59.26 |
| KXG37885 | Sorghum | nucleus | 58.65 | 59.17 |
| TraesCS5A01G432000.1 | Wheat | nucleus | 59.54 | 59.12 |
| GSMUA_Achr7P25790_001 | Banana | nucleus | 53.12 | 58.89 |
| Zm00001d033451_P004 | Maize | nucleus | 58.65 | 58.86 |
| TraesCS4A01G296200.1 | Wheat | nucleus | 59.0 | 58.69 |
| TraesCS4D01G015900.2 | Wheat | nucleus | 58.82 | 58.51 |
| Os03t0160600-01 | Rice | mitochondrion | 59.71 | 58.16 |
| TraesCS4B01G017400.1 | Wheat | nucleus | 58.47 | 58.16 |
| EER92819 | Sorghum | cytosol, mitochondrion, nucleus | 59.89 | 58.03 |
| Zm00001d048434_P001 | Maize | mitochondrion | 59.89 | 57.83 |
| Zm00001d034410_P001 | Maize | plastid | 59.54 | 57.79 |
| HORVU4Hr1G002820.15 | Barley | nucleus | 58.29 | 57.77 |
| CDY70508 | Canola | cytosol | 34.58 | 57.57 |
| CDY56450 | Canola | mitochondrion | 57.58 | 57.47 |
| CDX76691 | Canola | cytosol, mitochondrion, nucleus | 57.22 | 57.22 |
| Zm00001d013603_P006 | Maize | nucleus | 58.11 | 57.19 |
| TraesCS4D01G275200.1 | Wheat | nucleus | 59.18 | 57.14 |
| TraesCS4A01G029300.1 | Wheat | cytosol, mitochondrion, nucleus | 59.0 | 56.78 |
| TraesCS4B01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 59.0 | 56.68 |
| HORVU4Hr1G073350.1 | Barley | cytosol, mitochondrion, nucleus | 58.65 | 56.53 |
| Os10t0422500-01 | Rice | cytosol, mitochondrion, nucleus | 59.36 | 56.44 |
| HORVU5Hr1G104620.10 | Barley | nucleus | 60.07 | 56.26 |
| Zm00001d018929_P002 | Maize | cytosol | 60.07 | 55.79 |
| TraesCS6A01G225700.2 | Wheat | nucleus | 56.33 | 55.05 |
| EER91601 | Sorghum | nucleus | 57.4 | 54.76 |
| Zm00001d032935_P006 | Maize | nucleus | 57.58 | 54.65 |
| CDX79733 | Canola | nucleus | 37.61 | 47.95 |
| CDX91363 | Canola | mitochondrion | 40.46 | 47.49 |
| CDY18445 | Canola | mitochondrion | 40.82 | 46.17 |
| CDX74960 | Canola | mitochondrion | 40.82 | 45.89 |
| CDX93379 | Canola | mitochondrion | 40.29 | 45.56 |
| CDY07789 | Canola | mitochondrion | 37.08 | 45.02 |
| Os03t0663700-01 | Rice | nucleus | 23.17 | 44.67 |
| CDY04934 | Canola | nucleus | 37.61 | 44.61 |
| CDY14134 | Canola | plastid | 37.61 | 44.61 |
| CDX80935 | Canola | nucleus | 37.08 | 44.07 |
| CDY33984 | Canola | nucleus | 37.08 | 43.97 |
| CDY53817 | Canola | nucleus | 25.31 | 43.56 |
| CDY15795 | Canola | mitochondrion | 32.09 | 41.96 |
| CDY09402 | Canola | mitochondrion | 31.73 | 41.49 |
| CDY53820 | Canola | mitochondrion | 20.5 | 39.52 |
| CDY31285 | Canola | nucleus | 38.5 | 39.13 |
| CDX78819 | Canola | nucleus | 24.78 | 38.61 |
| CDY08822 | Canola | nucleus | 39.57 | 38.34 |
| CDY14538 | Canola | nucleus | 39.39 | 38.1 |
| CDY28392 | Canola | cytosol, golgi, mitochondrion, plastid | 36.72 | 37.8 |
| CDX73292 | Canola | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 36.19 | 37.73 |
| CDY05076 | Canola | mitochondrion | 36.19 | 35.3 |
| CDX90734 | Canola | mitochondrion | 36.36 | 35.17 |
| CDX72820 | Canola | cytosol, nucleus, plastid | 37.08 | 32.65 |
| CDY44496 | Canola | nucleus | 36.01 | 32.32 |
| CDX96338 | Canola | plastid | 37.43 | 32.26 |
| CDX68304 | Canola | cytosol, nucleus, plastid | 36.54 | 32.23 |
| CDX90428 | Canola | nucleus | 36.54 | 32.03 |
| CDY37949 | Canola | cytosol, nucleus, plastid | 33.16 | 30.1 |
| CDY03700 | Canola | cytosol, nucleus, plastid | 33.33 | 28.95 |
| CDY68359 | Canola | nucleus | 26.56 | 28.11 |
| CDY53816 | Canola | cytosol | 11.23 | 26.03 |
Protein Annotations
| EnsemblPlants:CDX86576 | EnsemblPlantsGene:GSBRNA2T00145206001 | Gene3D:3.60.10.10 | GO:A0A078DBD3 | GO:GO:0006629 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046856 | InterPro:Endo/exonu/phosph_ase_sf | InterPro:Endo/exonuclease/phosphatase | InterPro:IPPc |
| InterPro:IPR036691 | PANTHER:PTHR11200 | PANTHER:PTHR11200:SF159 | PFAM:PF03372 | ProteinID:CDX86576 | ProteinID:CDX86576.1 |
| SEG:seg | SMART:SM00128 | SUPFAM:SSF56219 | UniParc:UPI0004EEF4DC | MapMan:27.5.4.1 | : |
Description
BnaC08g01270D
Coordinates
chrLK031846:+:785198..787962
Molecular Weight (calculated)
64364.8 Da
IEP (calculated)
9.929
GRAVY (calculated)
-0.747
Length
561 amino acids
Sequence
(BLAST)
(BLAST)
001: MREDKSKTNK LAWSMKMVRK WFNIKSKTEE FQADVPAPSA GVEVEHRSSF SAEKAPSIIK KTKTEKLSKN WEQQARQRRM NYENPRIVDV QNYSIFTATW
101: NVAGRSPPPD LNLDEWLHSS APADIYVLGF QEIVPLNAGN VLGAEDNGPA QKWLSLIRKT LNNRPGTSGA SGYHTPSPVP VPMAELDADF SGSTRQKNST
201: FFHRRSFQTP SSTWNDPSVS QPGLDRRFSV CDRVFFSHRP SDFDPSFRGS SSSSSSSSHR PSDYSRRPSD YSRRPSSTAN ENGYRMPWNT SQYCLVASKQ
301: MVGVFLTIWV KSELREHVKN MKVSCVGRGL MGYLGNKGSI SISMLLHQTS FCFVCTHLTS GQKEGDELKR NSDVMEILKK TRFPRVKSLE DEKSPENILQ
401: HDRVIWLGDL NYRIALSYRS AKALVEMQNW RALLENDQLR IEQKRGHVFK GWNEGKIYFP PTYKYSRNSD RYSGDDLHPK EKRRTPAWCD RILWYGEGLH
501: QLSYVRGESR FSDHRPVYGI FCAEVESAHN RLKRTMSCSA SRVQAEELFP YSRGYTELSF F
101: NVAGRSPPPD LNLDEWLHSS APADIYVLGF QEIVPLNAGN VLGAEDNGPA QKWLSLIRKT LNNRPGTSGA SGYHTPSPVP VPMAELDADF SGSTRQKNST
201: FFHRRSFQTP SSTWNDPSVS QPGLDRRFSV CDRVFFSHRP SDFDPSFRGS SSSSSSSSHR PSDYSRRPSD YSRRPSSTAN ENGYRMPWNT SQYCLVASKQ
301: MVGVFLTIWV KSELREHVKN MKVSCVGRGL MGYLGNKGSI SISMLLHQTS FCFVCTHLTS GQKEGDELKR NSDVMEILKK TRFPRVKSLE DEKSPENILQ
401: HDRVIWLGDL NYRIALSYRS AKALVEMQNW RALLENDQLR IEQKRGHVFK GWNEGKIYFP PTYKYSRNSD RYSGDDLHPK EKRRTPAWCD RILWYGEGLH
501: QLSYVRGESR FSDHRPVYGI FCAEVESAHN RLKRTMSCSA SRVQAEELFP YSRGYTELSF F
001: MREEKSKTNK LAWSKKMVRK WFNIKSKTEE FQADDPSSAG IEVEHRSSFS AEKAPSTIKN TKTEKLSKNW EQQARQRRMN YENPRIIDVQ NYSIFVATWN
101: VAGRSPPSDL NLDEWLHSSA PADIYVLGFQ EIVPLNAGNV LGAEDNGPAQ KWLSLIRKTL NNRPGTSGTS GYHTPSPIPV PMAELDADFS GSTRQKNSTF
201: FHRRSFQTPS STWNDPSIPQ PGLDRRFSVC DRVFFSHRPS DFDPSFRGSS SSHRPSDYSR RPSDYSRRPS DYSRRPSDYS RRPSDSRPSD YSRPSDYYSR
301: PSDYSRPSDF SRSSDDDNGL GDSPSTVLYS PGSAANENGY RIPWNSSQYC LVASKQMVGV FLTIWVKSEL REHVKNMKVS CVGRGLMGYL GNKGSISISM
401: LLHQTSFCFV CTHLTSGQKE GDELKRNSDV MEILKKTRFP RVKSSEEEKS PENILQHDRV IWLGDLNYRI ALSYRSAKAL VEMQNWRALL ENDQLRIEQK
501: RGHVFKGWNE GKIYFPPTYK YSRNSDRYSG DDLHPKEKRR TPAWCDRILW FGEGLHQLSY VRGESRFSDH RPVYGIFCAE VESAHNRIKR TTSYSASRVQ
601: AEELLPYSRG YTELSFF
101: VAGRSPPSDL NLDEWLHSSA PADIYVLGFQ EIVPLNAGNV LGAEDNGPAQ KWLSLIRKTL NNRPGTSGTS GYHTPSPIPV PMAELDADFS GSTRQKNSTF
201: FHRRSFQTPS STWNDPSIPQ PGLDRRFSVC DRVFFSHRPS DFDPSFRGSS SSHRPSDYSR RPSDYSRRPS DYSRRPSDYS RRPSDSRPSD YSRPSDYYSR
301: PSDYSRPSDF SRSSDDDNGL GDSPSTVLYS PGSAANENGY RIPWNSSQYC LVASKQMVGV FLTIWVKSEL REHVKNMKVS CVGRGLMGYL GNKGSISISM
401: LLHQTSFCFV CTHLTSGQKE GDELKRNSDV MEILKKTRFP RVKSSEEEKS PENILQHDRV IWLGDLNYRI ALSYRSAKAL VEMQNWRALL ENDQLRIEQK
501: RGHVFKGWNE GKIYFPPTYK YSRNSDRYSG DDLHPKEKRR TPAWCDRILW FGEGLHQLSY VRGESRFSDH RPVYGIFCAE VESAHNRIKR TTSYSASRVQ
601: AEELLPYSRG YTELSFF
Arabidopsis Description
IP5P6CVP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WIE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.