Factsheet for TraesCS4B01G017400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G015900.2	Wheat	nucleus	99.65	99.65
TraesCS4A01G296200.1	Wheat	nucleus	98.4	98.4
HORVU4Hr1G002820.15	Barley	nucleus	93.79	93.46
KXG37885	Sorghum	nucleus	88.65	89.93
Zm00001d033451_P004	Maize	nucleus	87.94	88.73
Os03t0663700-01	Rice	nucleus	44.15	85.57
Zm00001d013603_P006	Maize	nucleus	86.17	85.26
VIT_07s0151g00590.t01	Wine grape	nucleus	67.38	68.1
GSMUA_Achr5P02940_001	Banana	nucleus	58.69	67.83
GSMUA_Achr7P01420_001	Banana	nucleus	58.33	66.46
GSMUA_Achr4P21240_001	Banana	cytosol	55.85	66.46
KRH32792	Soybean	cytosol	31.21	66.42
KRG95566	Soybean	nucleus	65.07	65.65
KRH67243	Soybean	nucleus	64.72	65.53
KRH32041	Soybean	nucleus	64.01	64.58
VIT_05s0020g03770.t01	Wine grape	cytosol, mitochondrion, nucleus	64.36	64.02
KRH71395	Soybean	nucleus	63.12	63.57
TraesCS5B01G434000.1	Wheat	nucleus	62.94	62.83
Solyc09g065480.1.1	Tomato	nucleus	62.23	62.68
PGSC0003DMT400049726	Potato	nucleus	62.23	62.68
TraesCS4B01G276600.1	Wheat	cytosol, mitochondrion, nucleus	64.01	61.82
GSMUA_Achr2P17460_001	Banana	nucleus	56.21	61.67
GSMUA_Achr7P07740_001	Banana	cytosol	54.96	61.26
KRG91335	Soybean	nucleus	62.23	60.73
AT3G63240.2	Thale cress	nucleus	58.87	60.69
KRH77819	Soybean	nucleus	62.06	60.45
KRH27671	Soybean	nucleus	61.7	60.1
CDY15360	Canola	nucleus	59.4	60.04
KRH35494	Soybean	nucleus	62.23	59.8
CDY15542	Canola	nucleus	57.98	59.67
CDY10113	Canola	nucleus	58.69	59.32
CDY47282	Canola	nucleus	58.69	59.21
Bra021766.1-P	Field mustard	nucleus	60.11	58.75
CDX86576	Canola	nucleus	58.16	58.47
CDY60962	Canola	cytosol, golgi, nucleus	59.93	58.18
AT2G32010.3	Thale cress	nucleus	61.17	58.08
PGSC0003DMT400042059	Potato	nucleus	60.82	57.55
Solyc09g082370.2.1	Tomato	nucleus	63.65	57.53
PGSC0003DMT400082071	Potato	nucleus	63.48	57.37
CDX76691	Canola	cytosol, mitochondrion, nucleus	56.91	57.22
Bra007737.1-P	Field mustard	mitochondrion	57.98	57.17
CDY56450	Canola	mitochondrion	56.74	56.94
Solyc06g054010.2.1	Tomato	nucleus	59.22	56.32
Bra015428.1-P	Field mustard	nucleus	57.98	56.09
AT1G05470.2	Thale cress	nucleus	59.93	54.78
Bra030611.1-P	Field mustard	nucleus	59.4	53.69
TraesCS7B01G086400.2	Wheat	nucleus, plastid	38.65	41.6
TraesCS4B01G230100.1	Wheat	cytosol	33.33	40.52
TraesCS5B01G201300.1	Wheat	cytosol	30.32	40.24
TraesCS1B01G316500.1	Wheat	plastid	38.12	38.88
TraesCS1B01G052100.1	Wheat	plastid	39.72	37.97
TraesCS4B01G129000.1	Wheat	nucleus, plastid	38.48	37.74
TraesCS6B01G331500.1	Wheat	nucleus, plastid	39.89	37.5
TraesCS3B01G369700.1	Wheat	nucleus	37.77	33.18
TraesCS3B01G134300.1	Wheat	cytosol, nucleus, plastid	33.69	32.59
TraesCS3B01G275500.1	Wheat	cytosol	36.88	31.0
TraesCS1B01G373800.3	Wheat	cytosol	35.46	29.85

Protein Annotations

EnsemblPlants:TraesCS4B01G017400.1	EnsemblPlantsGene:TraesCS4B01G017400	Gene3D:3.60.10.10	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0046856	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPPc	InterPro:IPR036691
PANTHER:PTHR11200	PANTHER:PTHR11200:SF151	PFAM:PF03372	SMART:SM00128	SUPFAM:SSF56219	MapMan:27.5.4.1

Description

No Description!

Coordinates

chr4B:+:12526182..12531043

Molecular Weight (calculated)

64894.5 Da

IEP (calculated)

9.435

GRAVY (calculated)

-0.684

Length

564 amino acids

Sequence
(BLAST)

001: MRDETPTKNR LSWSKTIVRK WFNIKTKAKD FHSDYGVEQV GMQWRTSFSE RDVCKTKKSR TERLPRKNSD RDCRAGNGID RAYITNTQDY RVFAGTWNVG
101: GRSPSSHLNL EDWLHTSPAA DIYVIGFQEI VPLNAGNVLL TEDNGPAKKW VSLVRKTLNN LDLQGSAGYN YHTPSPAPEP IAELNVDFER SSRRQKNSSF
201: FHRRSFQSLG RSSRIDMMDP HSLVDRRFSV CDRISFGSRP SDVDTSMRCG GSSDDENMDE ESPGGTFFSP MPCGYGAPLS TDDNNRRLVN SNRYCLVASK
301: QMVGVFLMVW VRSDIREHVK NLKVSCVGRG LMGYLGNKGS ISISMSLHQT SFCFVCTHLT SGQKDGDELR RNADVVEILR KTRFPHAHGA RDEKWPETIL
401: DHDRIIWLGD LNYRIALSYR SVKALVEMHN WKQLLEKDQL RIEQRFGRVF AGWKEGRIYF PPTYKYSYNS DRYAGDDMHP NEKRRTPAWC DRILWYGRGL
501: NQLCYVRGES RFSDHRPVYS IFTAEVKLPS QAQFGSFTRS SSLMGVDEVA YPTYPRSYTD INFY

Best Arabidopsis Sequence Match ( AT2G32010.3 )
(BLAST)

001: MRDDKTKKSK LSWSKKMVRK WFNIKSKTEK FQADVSLPQG VEVEHRNSFS EREPCTIKKS KTEKLNKNWE QQARQRKMNY ENPRIIDVQN HSIFVATWNV
101: AGRSPPEDLN LDEWLHSSAP ADIYVLGFQE IVPLNAGNVL GAEDNGPAKK WHSLIRKTLN NLPGASSACH TPSPIPVPIA EIDADFSGSS RQKNETFFNR
201: RSFQTPSVWS MEENDPSISQ PRLDRRFSVC DRVFFSHRPS DFDPSFRCGH RPSDYSRRPS DYSRPSDYYS RPSNYSRPSD VSRWGSSDDD NGPGDSPSTF
301: LNSPGSFLGS AANENGYRTP WNSSQYCLVA SKQMVGIFLT IWVKSELREH VKNMKVSCVG RGLMGYLGNK GSISISMLLH QTSFCFVCTH LTSGQKEGDE
401: LRRNSDVMEI LKKTRFPRVQ SSADEKSPEN ILQHDRVIWL GDLNYRIALS YRSAKALVEM QNWRALLEND QLRIEQKRGH VFKGWNEGKI YFPPTYKYSN
501: NSDRYAGGDL HPKEKRRTPA WCDRILWHGE GLHQLSYVRG ESRFSDHRPV YGIFSAEVES NHKRSKRTNS HSTARVEAEE LLPYARGYTE LTFF

Arabidopsis Description

IP5P7CVL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VNT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.