CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033451_P004	Maize	nucleus	98.02	97.5
Zm00001d013603_P006	Maize	nucleus	95.68	93.33
TraesCS4D01G015900.2	Wheat	nucleus	90.29	89.01
TraesCS4B01G017400.1	Wheat	nucleus	89.93	88.65
TraesCS4A01G296200.1	Wheat	nucleus	89.39	88.12
Os03t0663700-01	Rice	nucleus	45.5	86.94
HORVU4Hr1G002820.15	Barley	nucleus	86.69	85.16
GSMUA_Achr5P02940_001	Banana	nucleus	60.07	68.44
GSMUA_Achr4P21240_001	Banana	cytosol	57.55	67.51
VIT_07s0151g00590.t01	Wine grape	nucleus	67.27	67.03
GSMUA_Achr7P01420_001	Banana	nucleus	59.35	66.67
KRH32792	Soybean	cytosol	31.47	66.04
EER98050	Sorghum	cytosol	66.55	65.03
EER93309	Sorghum	nucleus	65.83	64.89
KRG95566	Soybean	nucleus	64.21	63.86
KRH32041	Soybean	nucleus	64.21	63.86
VIT_05s0020g03770.t01	Wine grape	cytosol, mitochondrion, nucleus	65.11	63.84
KRH67243	Soybean	nucleus	63.85	63.73
KRH71395	Soybean	nucleus	63.31	62.86
EER92819	Sorghum	cytosol, mitochondrion, nucleus	65.11	62.52
Solyc09g065480.1.1	Tomato	nucleus	62.77	62.32
PGSC0003DMT400049726	Potato	nucleus	62.77	62.32
GSMUA_Achr2P17460_001	Banana	nucleus	57.01	61.67
EER91601	Sorghum	nucleus	65.11	61.56
GSMUA_Achr7P07740_001	Banana	cytosol	55.58	61.07
AT3G63240.2	Thale cress	nucleus	59.89	60.88
KRH77819	Soybean	nucleus	62.95	60.45
KRG91335	Soybean	nucleus	62.77	60.38
CDY15360	Canola	nucleus	60.25	60.04
KRH27671	Soybean	nucleus	62.41	59.93
CDY15542	Canola	nucleus	58.63	59.49
CDY47282	Canola	nucleus	59.71	59.39
CDY10113	Canola	nucleus	59.53	59.32
KRH35494	Soybean	nucleus	62.59	59.28
CDX86576	Canola	nucleus	59.17	58.65
Bra021766.1-P	Field mustard	nucleus	60.79	58.58
CDY60962	Canola	cytosol, golgi, nucleus	60.97	58.35
AT2G32010.3	Thale cress	nucleus	61.87	57.91
CDX76691	Canola	cytosol, mitochondrion, nucleus	58.09	57.58
Bra007737.1-P	Field mustard	mitochondrion	58.99	57.34
CDY56450	Canola	mitochondrion	57.91	57.3
Solyc09g082370.2.1	Tomato	nucleus	63.67	56.73
PGSC0003DMT400082071	Potato	nucleus	63.49	56.57
PGSC0003DMT400042059	Potato	nucleus	60.43	56.38
Bra015428.1-P	Field mustard	nucleus	58.63	55.92
Solyc06g054010.2.1	Tomato	nucleus	58.81	55.14
AT1G05470.2	Thale cress	nucleus	60.43	54.46
Bra030611.1-P	Field mustard	nucleus	60.07	53.53
KXG19625	Sorghum	nucleus	39.03	42.47
EES15005	Sorghum	cytosol	30.58	41.56
OQU89459	Sorghum	cytosol	31.83	41.36
EES15004	Sorghum	mitochondrion	29.32	40.85
EES18903	Sorghum	nucleus	39.57	40.52
OQU87743	Sorghum	plastid	40.11	40.47
EES18414	Sorghum	nucleus, plastid	38.67	39.67
KXG27642	Sorghum	plastid	40.29	39.51
KXG22413	Sorghum	peroxisome	30.4	38.24
KXG39809	Sorghum	nucleus	34.17	38.23
KXG30738	Sorghum	nucleus	39.21	37.72
KXG22411	Sorghum	mitochondrion	35.61	33.17
EES00172	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	36.69	31.88
EES01371	Sorghum	plastid	35.97	30.72

Protein Annotations

MapMan:27.5.4.1	Gene3D:3.60.10.10	UniProt:A0A1B6QIZ2	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0046856	InterPro:IPPc	InterPro:IPR036691	EnsemblPlants:KXG37885	ProteinID:KXG37885	ProteinID:KXG37885.1
PFAM:PF03372	PANTHER:PTHR11200	PANTHER:PTHR11200:SF151	SMART:SM00128	EnsemblPlantsGene:SORBI_3001G145200	SUPFAM:SSF56219
UniParc:UPI00081ACBDC	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:11624502..11629031

Molecular Weight (calculated)

63741.2 Da

IEP (calculated)

9.270

GRAVY (calculated)

-0.610

Length

556 amino acids

Sequence
(BLAST)

001: MRDDNSSKNK LSWSKTLVRK WFNIKTKAKD FHSDYAADEV GVQWRTSFSD RDACKSKKSR TERLPKRNVE RDGRLGNGFD GAYITNTQDY RVFVGTWNVG
101: GRSPSSHLNL EDWLHTSPAA DIYVIGFQEI VPLNAGNVLL TEDNGPAKKW VSLVRKTLNN LDQQGSGVYN YHTPSPAPDP IVELNVDFER SSRRQRNSSF
201: FHRRSFQSFN RSSRIDMMDP HSLVDRRFSV CDRISFGSRP SDVDTSMRCG GSSDDENIDE ESPSGIFFPP MPCAYGAPLC TDSRYCLVAS KQMVGIFLMV
301: WVRSDIREHV KNLKVSCVGR GLMGYLGNKG SISISMSLHQ TSFCFVCTHL TSGQKDGDQL RRNADVVEIL RKTRFPHVHG AGDKKSPETI LDHDRIIWLG
401: DLNYRIALSY RSVKALVEMH NWKQLLEKDQ LRIEQRFGRV FAGWKEGRIY FPPTYKYSYN SDRYAGDDMH PNEKRRTPAW CDRILWYGRG LTQLCYVRGE
501: SRFSDHRPVY SIFTAEVQIP SQAAQFGGIT RSASLLGLDE LPYPTYPRSY MDINFY

Best Arabidopsis Sequence Match ( AT2G32010.3 )
(BLAST)

001: MRDDKTKKSK LSWSKKMVRK WFNIKSKTEK FQADVSLPQG VEVEHRNSFS EREPCTIKKS KTEKLNKNWE QQARQRKMNY ENPRIIDVQN HSIFVATWNV
101: AGRSPPEDLN LDEWLHSSAP ADIYVLGFQE IVPLNAGNVL GAEDNGPAKK WHSLIRKTLN NLPGASSACH TPSPIPVPIA EIDADFSGSS RQKNETFFNR
201: RSFQTPSVWS MEENDPSISQ PRLDRRFSVC DRVFFSHRPS DFDPSFRCGH RPSDYSRRPS DYSRPSDYYS RPSNYSRPSD VSRWGSSDDD NGPGDSPSTF
301: LNSPGSFLGS AANENGYRTP WNSSQYCLVA SKQMVGIFLT IWVKSELREH VKNMKVSCVG RGLMGYLGNK GSISISMLLH QTSFCFVCTH LTSGQKEGDE
401: LRRNSDVMEI LKKTRFPRVQ SSADEKSPEN ILQHDRVIWL GDLNYRIALS YRSAKALVEM QNWRALLEND QLRIEQKRGH VFKGWNEGKI YFPPTYKYSN
501: NSDRYAGGDL HPKEKRRTPA WCDRILWHGE GLHQLSYVRG ESRFSDHRPV YGIFSAEVES NHKRSKRTNS HSTARVEAEE LLPYARGYTE LTFF

Arabidopsis Description

IP5P7CVL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VNT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.