CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18445	Canola	mitochondrion	96.57	96.57
Bra017187.1-P	Field mustard	mitochondrion	95.36	95.56
CDX91363	Canola	mitochondrion	86.09	89.33
CDX74960	Canola	mitochondrion	88.91	88.38
AT2G37440.1	Thale cress	mitochondrion	82.66	85.59
CDY07789	Canola	mitochondrion	78.83	84.63
CDX79733	Canola	nucleus	74.6	84.09
KRH19738	Soybean	nucleus	55.65	59.1
KRH32331	Soybean	mitochondrion	55.04	58.96
KRG95832	Soybean	nucleus	55.85	58.94
KRH67562	Soybean	nucleus	57.26	57.61
PGSC0003DMT400061482	Potato	nucleus	53.23	56.77
VIT_08s0040g02520.t01	Wine grape	cytosol	54.23	55.58
CDY70508	Canola	cytosol	37.7	55.49
Solyc09g005690.2.1	Tomato	cytosol	46.77	54.85
Os05t0114100-00	Rice	cytosol, nucleus	43.15	49.31
GSMUA_Achr5P28560_001	Banana	nucleus	52.42	47.62
TraesCSU01G006000.2	Wheat	plastid	50.4	43.55
GSMUA_Achr8P02080_001	Banana	mitochondrion	48.99	43.01
EES18903	Sorghum	nucleus	46.77	42.73
TraesCS1A01G039300.1	Wheat	plastid	50.81	42.42
TraesCS1B01G052100.1	Wheat	plastid	50.2	42.2
CDX76691	Canola	cytosol, mitochondrion, nucleus	47.58	42.07
CDY56450	Canola	mitochondrion	47.38	41.81
CDY15360	Canola	nucleus	46.98	41.76
CDY33984	Canola	nucleus	39.72	41.65
Zm00001d035612_P001	Maize	mitochondrion	43.75	41.33
CDY15542	Canola	nucleus	45.36	41.06
CDY04934	Canola	nucleus	39.11	41.01
CDY14134	Canola	plastid	39.11	41.01
Zm00001d035614_P001	Maize	mitochondrion	42.94	40.73
GSMUA_Achr6P15360_001	Banana	nucleus	49.19	40.67
CDY10113	Canola	nucleus	45.56	40.5
CDX80935	Canola	nucleus	38.51	40.47
CDX86576	Canola	nucleus	45.56	40.29
CDY60962	Canola	cytosol, golgi, nucleus	47.18	40.28
CDY47282	Canola	nucleus	45.36	40.25
CDY09402	Canola	mitochondrion	34.48	39.86
CDY15795	Canola	mitochondrion	34.07	39.39
CDY53817	Canola	nucleus	24.19	36.81
CDY31285	Canola	nucleus	40.32	36.23
CDX78819	Canola	nucleus	25.81	35.56
CDY08822	Canola	nucleus	40.73	34.89
CDY14538	Canola	nucleus	40.73	34.83
CDY53820	Canola	mitochondrion	19.35	32.99
CDX73292	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	35.69	32.9
CDY28392	Canola	cytosol, golgi, mitochondrion, plastid	36.09	32.84
CDY05076	Canola	mitochondrion	35.48	30.61
CDX90734	Canola	mitochondrion	35.48	30.34
CDY44496	Canola	nucleus	38.1	30.24
CDX90428	Canola	nucleus	38.71	30.0
CDX72820	Canola	cytosol, nucleus, plastid	36.69	28.57
CDX68304	Canola	cytosol, nucleus, plastid	36.29	28.3
CDX96338	Canola	plastid	36.9	28.11
CDY68359	Canola	nucleus	28.83	26.98
CDY37949	Canola	cytosol, nucleus, plastid	33.27	26.7
CDY03700	Canola	cytosol, nucleus, plastid	33.06	25.39
CDY53816	Canola	cytosol	11.69	23.97

Protein Annotations

EnsemblPlants:CDX93379	EnsemblPlantsGene:GSBRNA2T00155364001	Gene3D:3.60.10.10	GO:A0A078DY67	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0046856	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPPc
InterPro:IPR036691	PANTHER:PTHR11200	PANTHER:PTHR11200:SF115	PFAM:PF03372	ProteinID:CDX93379	ProteinID:CDX93379.1
SEG:seg	SMART:SM00128	SUPFAM:SSF56219	UniParc:UPI0004EDE343	MapMan:27.5.4.1	:

Description

BnaC04g45170D

Coordinates

chrLK031875:-:1409189..1412512

Molecular Weight (calculated)

56540.7 Da

IEP (calculated)

9.072

GRAVY (calculated)

-0.719

Length

496 amino acids

Sequence
(BLAST)

001: MGKILKSKSS WPVTVVRKWL NLRSNAYEFH SDYPVKGKME PTQPRRKSCS DGDYYKIVPE KFPGWLGQEN GDFKQSTDED QMKRVDDLKM FVGTWNVGGK
101: SPHDGLMVKD WLKTSTDADI YVLGFQEIVP LNAGNVLGAE DNGPATKWLS LIREALNNNN DLSQNDLEVS KNHRTSFELT KSSQPSRRSI SNFPDDNLVA
201: CNSTLDRGYS LAASKQMVGI FLCVWVRDDL QKRITNLQVS SVGRGIMGYL GNKGSISISM SLHETSLCFV CTHLTSGEGE GDEVRRNLDV TEILKRTRFS
301: RSSKDSHQPE TIMDHDKVIW LGDLNYRLRA SSDVHGHLKN YDWEALLEKD QLKIEQRAGR VFQGWEEGKI YFAPTYKYHI NSDNYVAQTE KSKEKRRTPA
401: WCDRILWKGG GVKQIWYTRG ESRFSDHRPV QSLFSVHIDS TQNQSNRKTK PNNQNHRPNP VLPYTCHGKV QAEEILLLTR AQSCIDTQPR LISSAS

Best Arabidopsis Sequence Match ( AT2G37440.1 )
(BLAST)

001: MGKILKSKSS WPRTVVRKWL NLRSGAYEFH SDYPVKGMEP RRKSCSDMIV PENFQGWLGQ GNGDLKHSTG EQHVTRVDDK LDLKMFVGTW NVGGKSPHEG
101: LDLKDWLKSP ADADIYVLGF QEIVPLNAGN VLGAEDNGPA AKWLSLIREA LNNTNNLSPN ELEHTKSSQQ PRFSFSGLSD DTPIPCNSTP PRGYSLAASK
201: QMVGIFLCVW VRDDLRKRIT NLKVSCVGRG IMGYLGNKGS VSISMSLHET SLCFVCTHLT SGEKEGDELR RNLDVTEIFK RTRFSRSSKD SRPETIMDHD
301: KVIWLGDLNY RLRASSDLHE QLRNHDWESL LEKDQLKIEQ RAGRIFKGWE EGKIYFAPTY KYRINSDNYV VQTEKSKEKR RTPAWCDRIL WKGDGMKQLW
401: YVRGESKFSD HRPVQSLFSV HIDLKNQSNR KTKPVNQNHR PNPVLTYTCH GKVQAEEILL LTRAQSCIDT LPRLISSAS

Arabidopsis Description

IP5P8Type I inositol polyphosphate 5-phosphatase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q0WT19]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.