CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28392	Canola	cytosol, golgi, mitochondrion, plastid	93.31	92.11
AT1G34120.2	Thale cress	cytosol, mitochondrion, nucleus, plasma membrane	81.41	74.24
CDX90734	Canola	mitochondrion	68.03	63.1
CDY05076	Canola	mitochondrion	66.73	62.43
CDY53817	Canola	nucleus	33.46	55.21
GSMUA_Achr4P08910_001	Banana	endoplasmic reticulum	49.44	51.15
CDY53820	Canola	mitochondrion	27.51	50.86
KXG22413	Sorghum	peroxisome	39.96	48.64
GSMUA_Achr7P13350_001	Banana	mitochondrion	47.77	46.9
GSMUA_AchrUn_...	Banana	nucleus	50.56	46.9
CDY70508	Canola	cytosol	28.62	45.7
Zm00001d038831_P001	Maize	mitochondrion, nucleus	34.39	44.9
KXG22411	Sorghum	mitochondrion	48.88	44.05
TraesCS3A01G114900.1	Wheat	cytosol	47.96	43.95
TraesCS3B01G134300.1	Wheat	cytosol, nucleus, plastid	47.03	43.4
Os01t0183300-01	Rice	cytosol	49.26	43.37
CDX68304	Canola	cytosol, nucleus, plastid	50.74	42.92
EES01371	Sorghum	plastid	51.86	42.86
CDX72820	Canola	cytosol, nucleus, plastid	50.37	42.54
CDY37949	Canola	cytosol, nucleus, plastid	48.7	42.39
EES00172	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	50.37	42.34
CDX96338	Canola	plastid	50.93	42.09
Zm00001d038830_P002	Maize	plastid	45.72	42.05
Os01t0716800-01	Rice	plastid	52.6	41.86
TraesCS3B01G275500.1	Wheat	cytosol	52.04	41.73
TraesCS3D01G246900.1	Wheat	cytosol	51.86	41.46
TraesCS1A01G357300.2	Wheat	cytosol	48.7	41.32
TraesCS1D01G361500.2	Wheat	cytosol	48.51	41.3
TraesCS3A01G244500.1	Wheat	cytosol	51.49	41.22
CDY15795	Canola	mitochondrion	32.53	40.79
CDY09402	Canola	mitochondrion	32.34	40.56
CDY03700	Canola	cytosol, nucleus, plastid	48.7	40.56
GSMUA_Achr10P...	Banana	cytosol	50.37	40.45
TraesCS1B01G373800.3	Wheat	cytosol	50.37	40.45
TraesCS3D01G117300.2	Wheat	mitochondrion	48.14	40.22
CDX78819	Canola	nucleus	26.77	40.0
HORVU1Hr1G080460.7	Barley	cytosol, golgi, mitochondrion, plastid	50.19	39.59
HORVU3Hr1G020880.11	Barley	cytosol	46.47	39.56
Zm00001d043653_P004	Maize	plastid	51.86	39.13
HORVU3Hr1G067840.2	Barley	cytosol	51.67	38.94
CDX79733	Canola	nucleus	31.41	38.41
Zm00001d039582_P002	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	49.07	38.21
CDY53816	Canola	cytosol	16.91	37.6
CDX91363	Canola	mitochondrion	33.09	37.24
CDY15542	Canola	nucleus	37.92	37.23
CDY15360	Canola	nucleus	38.1	36.74
CDY10113	Canola	nucleus	37.92	36.56
CDY47282	Canola	nucleus	37.92	36.49
CDX86576	Canola	nucleus	37.73	36.19
CDY07789	Canola	mitochondrion	31.04	36.15
CDX74960	Canola	mitochondrion	33.46	36.07
CDY18445	Canola	mitochondrion	32.9	35.69
CDX93379	Canola	mitochondrion	32.9	35.69
CDX76691	Canola	cytosol, mitochondrion, nucleus	36.62	35.12
CDY60962	Canola	cytosol, golgi, nucleus	37.92	35.11
CDY56450	Canola	mitochondrion	36.62	35.05
Os05t0535600-00	Rice	cytosol, mitochondrion	23.79	34.97
CDX80935	Canola	nucleus	30.48	34.75
CDY04934	Canola	nucleus	30.3	34.46
CDY14134	Canola	plastid	30.3	34.46
CDX90428	Canola	nucleus	40.33	33.91
CDY33984	Canola	nucleus	29.74	33.83
CDY44496	Canola	nucleus	39.22	33.76
CDY68359	Canola	nucleus	30.3	30.75
CDY31285	Canola	nucleus	30.67	29.89
CDY08822	Canola	nucleus	31.04	28.84
CDY14538	Canola	nucleus	30.86	28.62

Protein Annotations

EnsemblPlants:CDX73292	EnsemblPlantsGene:GSBRNA2T00106372001	Gene3D:3.60.10.10	GO:A0A078C8V5	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0046856	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPPc
InterPro:IPR036691	PANTHER:PTHR11200	PANTHER:PTHR11200:SF128	PFAM:PF03372	ProteinID:CDX73292	ProteinID:CDX73292.1
SEG:seg	SMART:SM00128	SUPFAM:SSF56219	UniParc:UPI0004EEBDC8	MapMan:27.5.4.1	:

Description

BnaC05g28140D

Coordinates

chrLK031798:+:1079513..1082176

Molecular Weight (calculated)

61444.6 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.520

Length

538 amino acids

Sequence
(BLAST)

001: MAVVGSESRR TEMNWATICC SAFSCLQLYW ARLVIRKWLN VSSFDSDYSA DTDDDRLSLS GSQDFDPRSS GATKDDDDTD DCPKLRRRNS ETFRVQYIDT
101: QAVRICAGTW NVGGRVPPAD LDIDGWLDTL EPADIYVLGL QEIVPLNAGN IFGIEDAQPA SEWENIIRDA LDRVRPRKPK ILCHSDPPSP SMFKPYKEVS
201: HNVHDIVSEE SLTNIEVLDS TNDNASPSMQ INSDSQRDER FSYNERVGLS WPEPPLKLLN QYVLERRGGA FKSLNLRKPA YLRIVSKQMV GVFLTVWVRR
301: SLRKHISNLS VSTVGVGIMG YIGNKGSVSV SMSIYQTPFC FLCSHLSSGE KDTDHQKRND DVREIHRRTL FHPHSSSASV LPRSIRDHER VIWLGDLNYR
401: INLSYEKTHE LIARKEWQRL LENDQLSNEM RKGNVFEGWS EGVLCFPPTY KYEIDSENYI GDDPESGKRR PAWCDRVIWK GKGMKLLSYR RNEIKLSDHR
501: PVTATFLAEV EVLSPWKLQR ALALTYAEIQ SQLACKVA

Best Arabidopsis Sequence Match ( AT1G34120.1 )
(BLAST)

001: MAEVRSRSRR TESNWATICC SAFSCLQLYW ARIVLRKWFN VSASESDYSA DSDDDYEDRS QEFDPISSGV TNPRVDTDDR PKLRRRNSET FRMQYIDTKA
101: IRICAGTWNV GGRVPSSDLD IDGWLDTLEP ADIYVLGLQE IVPLNAGNIF GMEDDQPALE WENLIRDALN RVQPRKLKIK SHSDPPSPSK FKQPEEVPYS
201: VEDMFVETSH DACDGISSMD NKLNSVESTD VPIVSEDSLT NIDVLGSTND NASCLPIQEY LQRQFSTPNT PDRSLSMQIN SDSKREERFS YTERVGLSWP
301: EPPLRLLNQY VSERRGSFKS VNLTITNLRK PSYVRIVSKQ MVGVFLTIWV RRNLRKHISN LCVSTVGVGI MGYIGNKGSV SVSMSIYQTP FCFLCTHLSS
401: GEKDTDQEKR NDDVREIHRR TQFLPHSLNA NELPRSICNH ERIIWLGDLN YRINLSYEKT HELIARKEWQ RLVEYDQLSR EMTKGNLFEG WSEGTLDFAP
501: TYKYEIDSEN YIGDDPESGK RRPAWCDRII WNGKGMKLFN YRRNEIKLSD HRPVTATFLA EVEVLSPRKL QHALTLTYAE IQGLDA

Arabidopsis Description

IP5P1Type I inositol polyphosphate 5-phosphatase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q84MA2]
SUBAcon: [mitochondrion,plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.