Factsheet for TraesCS4A01G029300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G276600.1	Wheat	cytosol, mitochondrion, nucleus	99.31	99.14
TraesCS4D01G275200.1	Wheat	nucleus	98.8	99.14
HORVU4Hr1G073350.1	Barley	cytosol, mitochondrion, nucleus	98.46	98.63
Os03t0160600-01	Rice	mitochondrion	89.37	90.45
EER92819	Sorghum	cytosol, mitochondrion, nucleus	88.34	88.95
Zm00001d048434_P001	Maize	mitochondrion	88.34	88.64
TraesCS6A01G225700.2	Wheat	nucleus	79.76	81.01
GSMUA_Achr2P08860_001	Banana	cytosol	55.06	74.48
GSMUA_Achr3P14960_001	Banana	nucleus	66.55	73.35
GSMUA_Achr8P26780_001	Banana	endoplasmic reticulum	62.78	72.33
VIT_07s0151g00590.t01	Wine grape	nucleus	68.61	71.68
GSMUA_Achr7P25790_001	Banana	nucleus	60.21	69.37
PGSC0003DMT400049726	Potato	nucleus	66.55	69.29
Solyc09g065480.1.1	Tomato	nucleus	66.21	68.93
VIT_05s0020g03770.t01	Wine grape	cytosol, mitochondrion, nucleus	66.55	68.43
KRH32041	Soybean	nucleus	65.18	67.98
KRH32792	Soybean	cytosol	30.87	67.92
KRH67243	Soybean	nucleus	64.84	67.86
KRG95566	Soybean	nucleus	64.84	67.62
KRH71395	Soybean	nucleus	63.98	66.61
KRH77819	Soybean	nucleus	64.67	65.11
TraesCS4A01G296200.1	Wheat	nucleus	62.44	64.54
AT3G63240.2	Thale cress	nucleus	60.55	64.53
KRG91335	Soybean	nucleus	63.98	64.53
KRH27671	Soybean	nucleus	63.81	64.25
KRH35494	Soybean	nucleus	63.98	63.54
TraesCS5A01G432000.1	Wheat	nucleus	60.72	62.65
CDY47282	Canola	nucleus	58.83	61.36
CDX76691	Canola	cytosol, mitochondrion, nucleus	58.83	61.14
CDY10113	Canola	nucleus	58.32	60.93
CDY56450	Canola	mitochondrion	58.66	60.85
Bra007737.1-P	Field mustard	mitochondrion	59.69	60.84
CDY15360	Canola	nucleus	57.98	60.57
AT2G32010.3	Thale cress	nucleus	60.72	59.6
CDY15542	Canola	nucleus	55.92	59.49
Bra021766.1-P	Field mustard	nucleus	58.49	59.1
CDX86576	Canola	nucleus	56.78	59.0
CDY60962	Canola	cytosol, golgi, nucleus	58.66	58.86
Solyc09g082370.2.1	Tomato	nucleus	62.61	58.49
PGSC0003DMT400082071	Potato	nucleus	62.44	58.33
Bra015428.1-P	Field mustard	nucleus	57.8	57.8
PGSC0003DMT400042059	Potato	nucleus	58.32	57.05
AT1G05470.2	Thale cress	nucleus	59.52	56.24
Solyc06g054010.2.1	Tomato	nucleus	57.12	56.16
Bra030611.1-P	Field mustard	nucleus	58.15	54.33
TraesCS4A01G189600.1	Wheat	plastid	39.28	40.89
TraesCS1A01G305800.2	Wheat	plastid	38.25	40.33
TraesCS4A01G073900.1	Wheat	cytosol	32.08	40.22
TraesCS6A01G302300.1	Wheat	nucleus, plastid	40.82	39.87
TraesCS7A01G181500.1	Wheat	nucleus, plastid	33.79	39.8
TraesCS3A01G338100.1	Wheat	nucleus, plastid	39.28	39.41
TraesCS1A01G039300.1	Wheat	plastid	38.59	37.88
TraesCS5A01G202800.2	Wheat	endoplasmic reticulum, vacuole	27.27	35.73
TraesCS3A01G114900.1	Wheat	cytosol	32.93	32.71
TraesCS1A01G357300.2	Wheat	cytosol	34.99	32.18
TraesCS3A01G244500.1	Wheat	cytosol	35.68	30.95

Protein Annotations

EnsemblPlants:TraesCS4A01G029300.1	EnsemblPlantsGene:TraesCS4A01G029300	Gene3D:3.60.10.10	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0046856	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPPc	InterPro:IPR036691
PANTHER:PTHR11200	PANTHER:PTHR11200:SF157	PFAM:PF03372	SEG:seg	SMART:SM00128	SUPFAM:SSF56219
MapMan:27.5.4.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:21453656..21456398

Molecular Weight (calculated)

65857.1 Da

IEP (calculated)

9.209

GRAVY (calculated)

-0.729

Length

583 amino acids

Sequence
(BLAST)

001: MRDGCNTTKK SKLSWSKSLV RKWFNIRSKA HDFHADDAAA ASGRRGGGDD EEWRGSSFAR NEPASAAKKS RTERPSRRSR EHSRRGKIDL DAAEATVTMD
101: YRIFVATWNV GGRSPPGGMG LEDWLHAAPP ADIYVLGFQE IVPLNAGNVL GTEDNGPARK WVSLIRRTLN DLPGAGSGSG NGSFRTPSPA PPEPVAEADD
201: DFEGARHQTN NAAFFHRRSF HSRSLRMEGD ALAPQPRLER RYSVCDRAIY GSRRPSDYEA HCRWGGSSDD DNNTGESPST VYSPMSYGYG HAPSLDDGHR
301: PASGHTRYCL VASKQMVGLF LMIWARKDIR DDIRNLKVSC VGRGLMGYLG NKGSISISMT LHQTSFCFVC SHLTSGQKEG DEMRRNSDVL EILRKTRFPM
401: VYGQYERSPE TILEHDRIIW LGDLNYRIAL SYRSVKALVE MRNWKALLEK DQLRIEQRGG RVFAGWNEGR IYFPPTYKYS TNSDKYAGED MNQKEKRRTP
501: AWCDRILWYG RGLGQLSYVR GESRFSDHRP VYSVFSAEVE SINHSRIQKM SCSSSQLDIG ELLPYSYGYT DINPYGYTDL NFY

Best Arabidopsis Sequence Match ( AT2G32010.1 )
(BLAST)

001: MRDDKTKKSK LSWSKKMVRK WFNIKSKTEK FQADVSLPQG VEVEHRNSFS EREPCTIKKS KTEKLNKNWE QQARQRKMNY ENPRIIDVQN HSIFVATWNV
101: AGRSPPEDLN LDEWLHSSAP ADIYVLGFQE IVPLNAGNVL GAEDNGPAKK WHSLIRKTLN NLPGASSACH TPSPIPVPIA EIDADFSGSS RQKNETFFNR
201: RSFQTPSVWS MEENDPSISQ PRLDRRFSVC DRVFFSHRPS DFDPSFRCGH RPSDYSRRPS DYSRPSDYYS RPSNYSRPSD VSRWGSSDDD NGPGDSPSTF
301: LNSPGSFLGS AANENGYRTP WNSSQYCLVA SKQMVGIFLT IWVKSELREH VKNMKVSCVG RGLMGYLGNK GSISISMLLH QTSFCFVCTH LTSGQKEGDE
401: LRRNSDVMEI LKKTRFPRVQ SSADEKSPEN ILQHDRVIWL GDLNYRIALS YRSAKALVEM QNWRALLEND QLRIEQKRGH VFKGWNEGKI YFPPTYKYSN
501: NSDRYAGGDL HPKEKRRTPA WCDRILWHGE GLHQLSYVRG ESRFSDHRPV YGIFSAEVES NHKRSKRTNS HSTARVEAEE LLPYARGYTE LTFF

Arabidopsis Description

IP5P7CVL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VNT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.