Factsheet for TraesCS4D01G275200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G276600.1	Wheat	cytosol, mitochondrion, nucleus	99.48	98.97
TraesCS4A01G029300.1	Wheat	cytosol, mitochondrion, nucleus	99.14	98.8
HORVU4Hr1G073350.1	Barley	cytosol, mitochondrion, nucleus	98.8	98.63
Os03t0160600-01	Rice	mitochondrion	89.85	90.62
EER92819	Sorghum	cytosol, mitochondrion, nucleus	88.47	88.77
Zm00001d048434_P001	Maize	mitochondrion	88.47	88.47
GSMUA_Achr2P08860_001	Banana	cytosol	55.08	74.25
GSMUA_Achr3P14960_001	Banana	nucleus	66.61	73.16
GSMUA_Achr8P26780_001	Banana	endoplasmic reticulum	62.82	72.13
VIT_07s0151g00590.t01	Wine grape	nucleus	68.85	71.68
GSMUA_Achr7P25790_001	Banana	nucleus	60.59	69.57
PGSC0003DMT400049726	Potato	nucleus	66.95	69.46
Solyc09g065480.1.1	Tomato	nucleus	66.61	69.11
KRH32041	Soybean	nucleus	65.75	68.34
VIT_05s0020g03770.t01	Wine grape	cytosol, mitochondrion, nucleus	66.61	68.25
KRH32792	Soybean	cytosol	30.98	67.92
KRH67243	Soybean	nucleus	64.89	67.68
KRG95566	Soybean	nucleus	64.89	67.44
KRH71395	Soybean	nucleus	64.2	66.61
KRH77819	Soybean	nucleus	64.89	65.11
AT3G63240.2	Thale cress	nucleus	60.76	64.53
KRG91335	Soybean	nucleus	64.2	64.53
TraesCS4D01G015900.2	Wheat	nucleus	62.48	64.36
KRH27671	Soybean	nucleus	64.03	64.25
KRH35494	Soybean	nucleus	64.2	63.54
TraesCS5D01G439900.1	Wheat	nucleus	60.93	62.65
CDY47282	Canola	nucleus	59.38	61.72
CDY10113	Canola	nucleus	58.86	61.29
CDX76691	Canola	cytosol, mitochondrion, nucleus	59.04	61.14
CDY56450	Canola	mitochondrion	58.86	60.85
Bra007737.1-P	Field mustard	mitochondrion	59.9	60.84
CDY15360	Canola	nucleus	58.35	60.75
AT2G32010.3	Thale cress	nucleus	61.1	59.76
CDY15542	Canola	nucleus	56.28	59.67
CDX86576	Canola	nucleus	57.14	59.18
Bra021766.1-P	Field mustard	nucleus	58.69	59.1
CDY60962	Canola	cytosol, golgi, nucleus	58.86	58.86
Solyc09g082370.2.1	Tomato	nucleus	63.17	58.81
PGSC0003DMT400082071	Potato	nucleus	62.99	58.65
Bra015428.1-P	Field mustard	nucleus	58.18	57.98
PGSC0003DMT400042059	Potato	nucleus	58.52	57.05
AT1G05470.2	Thale cress	nucleus	59.72	56.24
Solyc06g054010.2.1	Tomato	nucleus	57.31	56.16
Bra030611.1-P	Field mustard	nucleus	58.35	54.33
TraesCS7D01G183100.1	Wheat	nucleus, plastid	38.55	43.08
TraesCS4D01G123400.1	Wheat	plastid	38.55	40.0
TraesCS4D01G231500.1	Wheat	cytosol	32.01	40.0
TraesCS6D01G281800.1	Wheat	nucleus, plastid	41.14	39.77
TraesCS3D01G331600.1	Wheat	nucleus, plastid	39.07	39.07
TraesCS1D01G305500.1	Wheat	mitochondrion	38.21	38.14
TraesCS5D01G209200.2	Wheat	cytosol, peroxisome, plasma membrane	27.37	33.4
TraesCS1D01G361500.2	Wheat	cytosol	35.46	32.59
TraesCS3D01G246900.1	Wheat	cytosol	35.63	30.76
TraesCS3D01G117300.2	Wheat	mitochondrion	33.56	30.28

Protein Annotations

EnsemblPlants:TraesCS4D01G275200.1	EnsemblPlantsGene:TraesCS4D01G275200	Gene3D:3.60.10.10	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0046856	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPPc	InterPro:IPR036691
PANTHER:PTHR11200	PANTHER:PTHR11200:SF157	PFAM:PF03372	SEG:seg	SMART:SM00128	SUPFAM:SSF56219
MapMan:27.5.4.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:445708689..445711410

Molecular Weight (calculated)

65760.0 Da

IEP (calculated)

9.114

GRAVY (calculated)

-0.734

Length

581 amino acids

Sequence
(BLAST)

001: MRDGCDTTKK SKLSWSKSLV RKWFNIRSKA HDFHADDAAA ATGRRGDDDE WRGSSFARNE PTSAAKKSRT ERPSRRSREH SRRGKIDLDA AEATVTMDYR
101: IFVATWNVGG RSPPGGMGLE DWLHAAPPAD IYVLGFQEIV PLNAGNVLGT EDNGPARKWV SLIRRTLNDL PGAGSGSGNG SFRTPSPAPP DPVAEADDDF
201: EGARHQTNNA AFFHRRSFHS RSLRMEGDAL APQPRLERRY SVCDRAIYGS RRPSDYEAHC RWGGSSDDDN NTGESPSTVY SPMSYGYGHA PSLDDGHRPA
301: SGHTRYCLVA SKQMVGLFLM IWARKDIRDD IRNLKVSCVG RGLMGYLGNK GSISISMTLH QTSFCFVCSH LTSGQKEGDE MRRNSDVLEI LRKTRFPMVY
401: GQYERSPETI LEHDRIIWLG DLNYRIALSY RSVKALVEMR NWKALLEKDQ LRIEQRGGRV FAGWNEGRIY FPPTYKYSTN SDKYAGEDMN QKEKRRTPAW
501: CDRILWYGRG LGQLSYVRGE SRFSDHRPVY SVFSAEVESI NHSRIQKMSC SSSQLDIGEL LPYSYGYTDI NPYGYTDLNF Y

Best Arabidopsis Sequence Match ( AT2G32010.1 )
(BLAST)

001: MRDDKTKKSK LSWSKKMVRK WFNIKSKTEK FQADVSLPQG VEVEHRNSFS EREPCTIKKS KTEKLNKNWE QQARQRKMNY ENPRIIDVQN HSIFVATWNV
101: AGRSPPEDLN LDEWLHSSAP ADIYVLGFQE IVPLNAGNVL GAEDNGPAKK WHSLIRKTLN NLPGASSACH TPSPIPVPIA EIDADFSGSS RQKNETFFNR
201: RSFQTPSVWS MEENDPSISQ PRLDRRFSVC DRVFFSHRPS DFDPSFRCGH RPSDYSRRPS DYSRPSDYYS RPSNYSRPSD VSRWGSSDDD NGPGDSPSTF
301: LNSPGSFLGS AANENGYRTP WNSSQYCLVA SKQMVGIFLT IWVKSELREH VKNMKVSCVG RGLMGYLGNK GSISISMLLH QTSFCFVCTH LTSGQKEGDE
401: LRRNSDVMEI LKKTRFPRVQ SSADEKSPEN ILQHDRVIWL GDLNYRIALS YRSAKALVEM QNWRALLEND QLRIEQKRGH VFKGWNEGKI YFPPTYKYSN
501: NSDRYAGGDL HPKEKRRTPA WCDRILWHGE GLHQLSYVRG ESRFSDHRPV YGIFSAEVES NHKRSKRTNS HSTARVEAEE LLPYARGYTE LTFF

Arabidopsis Description

IP5P7CVL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VNT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.