Factsheet for PGSC0003DMT400061439

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 2
plastid 1
nucleus 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g005860.2.1	Tomato	cytosol, peroxisome, plasma membrane	98.52	98.52
VIT_08s0040g02760.t01	Wine grape	cytosol	67.1	67.1
KRH67582	Soybean	cytosol	63.03	65.45
KRG95864	Soybean	cytosol, peroxisome, plasma membrane	62.85	64.15
PGSC0003DMT400078144	Potato	cytosol	62.85	63.55
GSMUA_Achr8P02120_001	Banana	cytosol	60.81	61.15
PGSC0003DMT400025094	Potato	cytosol	59.7	59.81
PGSC0003DMT400040191	Potato	cytosol	58.78	59.33
TraesCS4B01G202300.1	Wheat	cytosol	57.3	57.41
TraesCS4D01G203200.1	Wheat	cytosol	57.12	57.22
CDY70132	Canola	cytosol	55.08	56.55
CDY10435	Canola	cytosol	55.08	56.55
Bra009576.1-P	Field mustard	cytosol	54.71	56.17
TraesCS4A01G102300.1	Wheat	cytosol	56.56	56.04
GSMUA_Achr6P33230_001	Banana	cytosol	61.18	55.82
Os03t0281100-00	Rice	cytosol	58.23	55.75
Zm00001d028680_P001	Maize	cytosol	57.12	54.98
AT5G02620.5	Thale cress	cytosol	55.27	54.66
EER95066	Sorghum	cytosol	56.56	53.97
PGSC0003DMT400064924	Potato	cytosol	51.76	50.82
PGSC0003DMT400075256	Potato	cytosol	51.57	49.56
PGSC0003DMT400052568	Potato	cytosol	52.13	49.39
GSMUA_Achr9P04150_001	Banana	plasma membrane	58.96	48.48
PGSC0003DMT400051426	Potato	plasma membrane	40.85	42.26
HORVU4Hr1G058450.9	Barley	plastid	47.87	42.11
PGSC0003DMT400060447	Potato	cytosol, nucleus, plasma membrane	44.18	40.92
PGSC0003DMT400028722	Potato	cytosol, plastid	42.14	37.38
PGSC0003DMT400011023	Potato	cytosol	28.47	24.96
PGSC0003DMT400011032	Potato	cytosol, peroxisome, plasma membrane	25.32	24.91
PGSC0003DMT400031466	Potato	cytosol, peroxisome, plasma membrane	25.51	24.64
PGSC0003DMT400071072	Potato	cytosol	12.75	18.65

Protein Annotations

Gene3D:1.25.40.20	Gene3D:1.25.40.960	EntrezGene:102593562	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M1C7H8
PFAM:PF12796	PFAM:PF13857	PFAM:PF13962	InterPro:PGG_dom	EnsemblPlantsGene:PGSC0003DMG400023912	PGSC:PGSC0003DMG400023912
EnsemblPlants:PGSC0003DMT400061439	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24186	PANTHER:PTHR24186:SF4	SMART:SM00248
SUPFAM:SSF48403	TMHMM:TMhelix	UniParc:UPI0002955E91	RefSeq:XP_006345675.1	SEG:seg	:

Description

Ankyrin repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023912]

Coordinates

chr9:-:7302103..7305075

Molecular Weight (calculated)

59509.4 Da

IEP (calculated)

9.801

GRAVY (calculated)

0.008

Length

541 amino acids

Sequence
(BLAST)

001: MDSSVVQQNV CVKKMTKQLT GKRGDTQIHS VVRSGNLELV LEIITCCGEA ELVELLSKQN QSGENALYVA AESGDLVLVK ELIKYYDIGL ASIKARNGYD
101: AFHVAAKQGD FEMVKVLLEA FPQLSVTFDQ SNSTALHTAS AQGHIDVVNF LLETNSSLAT IQKNNGKTAL HSSARNGHVA VVKALLSKEE GILNWRDKKG
201: QTALHMAVKG QSVDVVNELI LSDPTLATII DGKGNTSLHI ATRKGRVEIV QALVKDKRMK WDAINKSGET ALDVAEKARN SEIAAILKEH GVLTAKNMKL
301: ALPTRSAKEL KQTVSDIKHD VHNQLEHTFQ TQKRVKNIAK RLNKMHTEGI NNAINSTTVV AVLIATVTFA AIFNLPGQYT DNPKEVPPGY SIGEGRIAPQ
401: PPFVIFFIFD SLALFISLAV VVVQTSIVVV ERRAKKQMMA IINKLMWLAC VFVSVAFLAL SYIVIGKDER WMASAVTFMG TFIMVATLGT LCYWVVMHRI
501: ESSNLRSQRK SARSSKSLSR SVSIMSESEI PEDQYKKLYA I

Best Arabidopsis Sequence Match ( AT1G07710.2 )
(BLAST)

001: MEGEEDTVAG SSIPKKKMMK QLTGKRDDTL LHSAVRHGNK DRVVEILTKT RESELNQLLG KQNQSGETAL YVAAEYGDVE IVKEMINCYD LALVEIKARN
101: GFDAFHIAAK QGDLDVLKVL AEAHSELAMT VDLSNTTALH TAATQGHTEV VNFLLELGSS LAGIAKSNGK TALHSASRNG HVKVIKALLA SEPAIAIRMD
201: KKGQTALHMA VKGTNVEVVE ELIKADRSSI NIADTKGNTA LHIAARKGRS QIVKLLLANN MTDTKAVNRS GETALDTAEK IGNPEVALIL QKHGVPSAKT
301: IKPSGPNPAR ELKQTVSDIK HEVHNQLEHT RLTRKRVQGI AKQLNKMHTE GLNNAINSTT VVAVLIATVA FAAIFTVPGQ YVEDTSKIPD GHSLGEANIA
401: STTPFIIFFI FDSIALFISL AVVVVQTSVV VIESKAKKQM MAVINKLMWL ACVLISVAFL ALSFVVVGEE EKWLAIWVTA IGATIMITTL GTMCYWIIQH
501: KIEAANLRNI RRSSINSISG SWGIPQLTDS DILQNECKKM YAI

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LQP7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.