Factsheet for PGSC0003DMT400060447

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

cytosol 2
plastid 1
nucleus 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g054830.2.1	Tomato	nucleus	98.63	98.63
GSMUA_Achr11P...	Banana	cytosol	63.7	75.76
GSMUA_Achr5P07190_001	Banana	cytosol	68.15	75.67
GSMUA_Achr9P04170_001	Banana	cytosol	65.41	74.9
GSMUA_Achr7P15350_001	Banana	cytosol, plastid	70.72	74.01
GSMUA_Achr6P33220_001	Banana	cytosol	67.47	72.03
GSMUA_Achr6P34410_001	Banana	cytosol	62.67	71.76
PGSC0003DMT400028722	Potato	cytosol, plastid	70.38	67.38
EES03848	Sorghum	cytosol	63.01	66.19
HORVU3Hr1G087050.1	Barley	cytosol	62.5	66.0
TraesCS3A01G354800.1	Wheat	cytosol	62.67	65.95
Zm00001d042948_P001	Maize	cytosol	62.84	65.89
Os01t0837000-01	Rice	cytosol	62.67	65.83
TraesCS3B01G387800.2	Wheat	cytosol	62.16	65.52
TraesCS3D01G348800.2	Wheat	cytosol	61.99	65.23
Os03t0281000-01	Rice	nucleus, peroxisome, plasma membrane	73.63	63.05
EER95067	Sorghum	cytosol, nucleus, plasma membrane	72.6	61.63
TraesCS4B01G202400.2	Wheat	cytosol, nucleus, plasma membrane	73.12	61.53
Zm00001d028679_P002	Maize	cytosol, nucleus, plasma membrane	72.6	61.27
HORVU4Hr1G058480.2	Barley	cytosol, nucleus, plasma membrane	72.77	61.15
TraesCS4D01G203300.1	Wheat	cytosol, nucleus, plasma membrane	73.63	60.82
Zm00001d047772_P002	Maize	plastid	72.09	60.49
TraesCS4A01G102200.2	Wheat	nucleus	72.95	59.0
PGSC0003DMT400078144	Potato	cytosol	42.12	45.98
PGSC0003DMT400040191	Potato	cytosol	41.27	44.96
PGSC0003DMT400061439	Potato	cytosol, peroxisome, plasma membrane	40.92	44.18
PGSC0003DMT400051426	Potato	plasma membrane	39.38	43.98
PGSC0003DMT400025094	Potato	cytosol	40.24	43.52
PGSC0003DMT400075256	Potato	cytosol	39.21	40.67
PGSC0003DMT400052568	Potato	cytosol	39.04	39.93
PGSC0003DMT400064924	Potato	cytosol	37.33	39.56
GSMUA_Achr9P03090_001	Banana	cytosol	51.03	35.6
PGSC0003DMT400031466	Potato	cytosol, peroxisome, plasma membrane	24.14	25.18
PGSC0003DMT400011032	Potato	cytosol, peroxisome, plasma membrane	22.95	24.36
PGSC0003DMT400011023	Potato	cytosol	25.68	24.31
PGSC0003DMT400071072	Potato	cytosol	12.16	19.19

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:102597721	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005886	GO:GO:0006950	GO:GO:0008150	GO:GO:0009628	GO:GO:0009651
GO:GO:0016020	GO:GO:0016021	GO:GO:0034613	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
UniProt:M1C5W0	PFAM:PF00023	PFAM:PF12796	PFAM:PF13962	InterPro:PGG_dom	EnsemblPlantsGene:PGSC0003DMG400023510
PGSC:PGSC0003DMG400023510	EnsemblPlants:PGSC0003DMT400060447	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24177	PANTHER:PTHR24177:SF107
SMART:SM00248	SUPFAM:SSF48403	TMHMM:TMhelix	UniParc:UPI000295BE1B	RefSeq:XP_006345920.1	SEG:seg

Description

Ankyrin repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023510]

Coordinates

chr5:+:50549271..50554522

Molecular Weight (calculated)

63807.9 Da

IEP (calculated)

9.621

GRAVY (calculated)

-0.152

Length

584 amino acids

Sequence
(BLAST)

001: MASPVEEGER DVEKGLITPT PSHNPLAEPS PTPSPSSATA PALVLSNSGK RMDQAGKKKY VKQVTGRHND TELHLAAQKG DLAAVKQILN DIDTQMVGTL
101: SGDDFNQEVA EIRASVVNEV NELGETALFT AAAKGYIEVL KELLKYCNKD TLTKKNRSGF DPLHIAASQG HHGIVQLLLE HDTGLSKTFG PSNATPLITA
201: ASRGHIAVVN ELLSKDCTLL EISRSNGKNA LHLAARQGHV EIVKALLDRD PQLARRTDKK GQTALHMAVK GISCDVVILL LEADAAIVML PDKFGNTALH
301: IATRKKRAEI VRELLRLPDS NVNALNRDHK TALDIAEDLP LSEESSDIKE CLYKYGAVRA NELNQPRDEL RKTVSQIKKD IHTQLEQTKR TNKNVHGIAK
401: ELRKLHREGI NNATNSVTVV AVLFATVAFA AIFTVPGGDD NHGVAVVVST ASFKIFFIFN ALALFTSLAV VVVQITLVRG ETKAERRVVE VINKLMWLAS
501: VCTSVAFMAS SYIVVGRKYE WAAILVTAVG GIIMAGVLGT MTYYVVRSRK KRSIRKKEKH ARSGSNSWYH SEFSNSDIDR IYAL

Best Arabidopsis Sequence Match ( AT3G12360.1 )
(BLAST)

001: MAASSYVDGE RDMEKGGMIL LQSSENQNPM IDPSPTPSPS ATATAPALVL SNSGKRMDQA GKKKYVKQVT GRHNDTELHL AAQRGDLAAV QQILKDINSQ
101: MEGILSGEEF DAEVAEIRAS IVNEVNELGE TALFTAADKG HLDVVKELLK YSSRESIAKK NRSGYDPLHI AAIQGHHAIV EVLLDHDATL SQTFGPSNAT
201: PLVSAAMRGH TEVVNQLLSK AGNLLEISRS NNKNALHLAA RQGHVEVIKA LLSKDPQLAR RIDKKGQTAL HMAVKGQSSE VVKLLLDADP AIVMQPDKSC
301: NTALHVATRK KRAEIVELLL SLPDTNANTL TRDHKTALDI AEGLPLSEES SYIKECLARS GALRANELNQ PRDELRSTVT QIKNDVHIQL EQTKRTNKNV
401: HNISKELRKL HREGINNATN SVTVVAVLFA TVAFAAIFTV PGGDNNDGSA VVVGRASFKI FFIFNALALF TSLAVVVVQI TLVRGETKAE KRVVEVINKL
501: MWLASMCTSV AFLASSYIVV GRKNEWAAEL VTVVGGVIMA GVLGTMTYYV VKSKRTRSMR KKVKSARRSG SNSWHHSDFS NSEVDPIFAI

Arabidopsis Description

ITN1Ankyrin repeat-containing protein ITN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.