Factsheet for GSMUA_Achr9P04170_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	84.12	87.37
GSMUA_Achr6P33220_001	Banana	cytosol	84.12	78.43
GSMUA_Achr5P07190_001	Banana	cytosol	80.39	77.95
GSMUA_Achr7P15350_001	Banana	cytosol, plastid	82.94	75.81
GSMUA_Achr6P34410_001	Banana	cytosol	73.92	73.92
KRG92972	Soybean	cytosol	77.25	67.35
Bra038714.1-P	Field mustard	cytosol, plastid	76.08	67.24
CDY42145	Canola	cytosol	76.27	66.5
AT3G12360.1	Thale cress	cytosol	76.86	66.44
Bra034760.1-P	Field mustard	cytosol	75.88	66.15
CDY50551	Canola	cytosol	75.88	65.7
CDY50335	Canola	cytosol	75.69	65.53
PGSC0003DMT400060447	Potato	cytosol, nucleus, plasma membrane	74.9	65.41
KRH36223	Soybean	cytosol	75.88	65.37
VIT_13s0067g03880.t01	Wine grape	cytosol	75.1	65.03
Solyc05g054830.2.1	Tomato	nucleus	74.31	64.9
CDY07932	Canola	nucleus, plastid	73.92	62.94
VIT_08s0040g02750.t01	Wine grape	cytosol, peroxisome, plasma membrane	78.04	62.38
CDX73985	Canola	nucleus	73.92	61.9
Bra001304.1-P	Field mustard	nucleus	73.92	61.9
AT3G09550.2	Thale cress	cytosol, nucleus, plasma membrane	73.73	61.24
Os03t0281000-01	Rice	nucleus, peroxisome, plasma membrane	80.59	60.26
Solyc10g084550.1.1	Tomato	plastid	69.02	60.17
TraesCS4B01G202400.2	Wheat	cytosol, nucleus, plasma membrane	81.37	59.8
HORVU4Hr1G058480.2	Barley	cytosol, nucleus, plasma membrane	81.18	59.57
TraesCS4D01G203300.1	Wheat	cytosol, nucleus, plasma membrane	81.57	58.84
Zm00001d047772_P002	Maize	plastid	80.2	58.76
Zm00001d028679_P002	Maize	cytosol, nucleus, plasma membrane	79.61	58.67
CDY08436	Canola	cytosol	75.88	58.64
EER95067	Sorghum	cytosol, nucleus, plasma membrane	78.82	58.43
PGSC0003DMT400028722	Potato	cytosol, plastid	68.82	57.54
TraesCS4A01G102200.2	Wheat	nucleus	80.98	57.2
GSMUA_Achr7P23720_001	Banana	cytosol, peroxisome, plasma membrane	21.57	47.01
GSMUA_Achr8P02120_001	Banana	cytosol	48.63	46.1
GSMUA_Achr6P33230_001	Banana	cytosol	48.82	41.99
GSMUA_Achr5P05930_001	Banana	cytosol, plasma membrane	41.96	41.23
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	45.1	39.86
GSMUA_Achr7P23730_001	Banana	cytosol	22.75	36.59
GSMUA_Achr9P04150_001	Banana	plasma membrane	47.06	36.47
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plasma membrane, plastid	45.29	35.54
GSMUA_Achr9P03090_001	Banana	cytosol	55.29	33.69
GSMUA_Achr9P02700_001	Banana	cytosol	15.49	20.52
GSMUA_Achr9P02720_001	Banana	cytosol	15.1	19.79
GSMUA_Achr9P02740_001	Banana	cytosol	22.35	19.42
GSMUA_Achr9P02690_001	Banana	plasma membrane	20.39	18.06
GSMUA_Achr7P12630_001	Banana	cytosol	22.94	17.97

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr9G04170_001
EnsemblPlants:GSMUA_Achr9P04170_001	EnsemblPlants:GSMUA_Achr9T04170_001	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M0TXC6
PFAM:PF12796	PFAM:PF13962	InterPro:PGG_dom	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24177
PANTHER:PTHR24177:SF107	SMART:SM00248	SUPFAM:SSF48403	TMHMM:TMhelix	UniParc:UPI000296144A	SEG:seg

Description

Ankyrin repeat-containing protein At3g12360 [Source:GMGC_GENE;Acc:GSMUA_Achr9G04170_001]

Coordinates

chr9:+:2819012..2822022

Molecular Weight (calculated)

55559.2 Da

IEP (calculated)

9.168

GRAVY (calculated)

-0.013

Length

510 amino acids

Sequence
(BLAST)

001: MDPSGKKKYV KQVTGRHNDT ELHLAAQRGD LAAVAEIRAA VVNDVNEVDE TALFTAAEKG FLDVVVELLK YSDQESLVRR NKSGFDALHI AAREGHQAIV
101: QVLIGHNPAL VKTFGQSNAT PLITAATRGH TEVVNLLLEQ DPSLIELSKN NGKNALHFAA RQGHVEIVKA LLGKDSQLAR RTDKKGQTAL HMAVKGTCCG
201: VVKALVDADP ALVMLPDRAG NTTLHVAARK KRVEIVNLLL LLPETNVNTL TRDHKTALDI VDGLPLSEES ADIKDCLSRC GACRADELNQ PRDELRQTVT
301: EIKNDVHIQL EQTRKTNKNV HGIAKELKKL HSEGINNATN SVTVVAVLFA TVAFAAIFTV PGGTDDNGAA VVAQKGSFKV FFIFNAIALF TSLAVVVVQI
401: TLVRGEMKAE RRVVEVINKL MWLASVCTSV SFIASSYIVV GRHFEWAAVL VTLIGGVIMA GVLGTMTFYV VKTKRTRSMR KREKSMRSGS NSWHHPSEFS
501: DSEIDSIYAI

Best Arabidopsis Sequence Match ( AT3G12360.1 )
(BLAST)

001: MAASSYVDGE RDMEKGGMIL LQSSENQNPM IDPSPTPSPS ATATAPALVL SNSGKRMDQA GKKKYVKQVT GRHNDTELHL AAQRGDLAAV QQILKDINSQ
101: MEGILSGEEF DAEVAEIRAS IVNEVNELGE TALFTAADKG HLDVVKELLK YSSRESIAKK NRSGYDPLHI AAIQGHHAIV EVLLDHDATL SQTFGPSNAT
201: PLVSAAMRGH TEVVNQLLSK AGNLLEISRS NNKNALHLAA RQGHVEVIKA LLSKDPQLAR RIDKKGQTAL HMAVKGQSSE VVKLLLDADP AIVMQPDKSC
301: NTALHVATRK KRAEIVELLL SLPDTNANTL TRDHKTALDI AEGLPLSEES SYIKECLARS GALRANELNQ PRDELRSTVT QIKNDVHIQL EQTKRTNKNV
401: HNISKELRKL HREGINNATN SVTVVAVLFA TVAFAAIFTV PGGDNNDGSA VVVGRASFKI FFIFNALALF TSLAVVVVQI TLVRGETKAE KRVVEVINKL
501: MWLASMCTSV AFLASSYIVV GRKNEWAAEL VTVVGGVIMA GVLGTMTYYV VKSKRTRSMR KKVKSARRSG SNSWHHSDFS NSEVDPIFAI

Arabidopsis Description

ITN1Ankyrin repeat-containing protein ITN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.