Factsheet for Solyc10g084550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028722	Potato	cytosol, plastid	97.78	93.77
CDY07932	Canola	nucleus, plastid	71.79	70.12
GSMUA_Achr5P07190_001	Banana	cytosol	62.56	69.58
Solyc05g054830.2.1	Tomato	nucleus	69.4	69.52
GSMUA_Achr11P...	Banana	cytosol	57.95	69.04
GSMUA_Achr9P04170_001	Banana	cytosol	60.17	69.02
Bra001304.1-P	Field mustard	nucleus	71.79	68.97
CDX73985	Canola	nucleus	71.79	68.97
GSMUA_Achr6P34410_001	Banana	cytosol	59.83	68.63
VIT_08s0040g02750.t01	Wine grape	cytosol, peroxisome, plasma membrane	74.53	68.34
AT3G09550.2	Thale cress	cytosol, nucleus, plasma membrane	70.94	67.59
GSMUA_Achr7P15350_001	Banana	cytosol, plastid	64.27	67.38
GSMUA_Achr6P33220_001	Banana	cytosol	61.2	65.45
Zm00001d042948_P001	Maize	cytosol	57.95	60.86
Os01t0837000-01	Rice	cytosol	57.44	60.43
EES03848	Sorghum	cytosol	57.44	60.43
TraesCS3A01G354800.1	Wheat	cytosol	56.58	59.64
TraesCS3B01G387800.2	Wheat	cytosol	56.41	59.57
TraesCS3D01G348800.2	Wheat	cytosol	56.41	59.46
HORVU3Hr1G087050.1	Barley	cytosol	56.07	59.31
Zm00001d047772_P002	Maize	plastid	67.01	56.32
Os03t0281000-01	Rice	nucleus, peroxisome, plasma membrane	65.47	56.16
EER95067	Sorghum	cytosol, nucleus, plasma membrane	65.81	55.96
Zm00001d028679_P002	Maize	cytosol, nucleus, plasma membrane	65.81	55.64
TraesCS4B01G202400.2	Wheat	cytosol, nucleus, plasma membrane	64.79	54.61
HORVU4Hr1G058480.2	Barley	cytosol, nucleus, plasma membrane	64.79	54.53
TraesCS4D01G203300.1	Wheat	cytosol, nucleus, plasma membrane	65.13	53.89
TraesCS4A01G102200.2	Wheat	nucleus	64.79	52.49
Solyc06g075600.2.1	Tomato	cytosol, peroxisome, plasma membrane	40.68	44.49
Solyc11g072960.1.1	Tomato	cytosol	39.49	43.5
Solyc09g005860.2.1	Tomato	cytosol, peroxisome, plasma membrane	39.15	42.33
Solyc12g096670.1.1	Tomato	cytosol	39.49	40.24
Solyc06g005240.2.1	Tomato	cytosol	30.94	40.22
Solyc01g005340.2.1	Tomato	plasma membrane	35.56	39.77
Solyc08g014570.2.1	Tomato	cytosol, peroxisome, plasma membrane	36.92	38.43
Solyc12g019060.1.1	Tomato	cytosol	37.44	38.42
GSMUA_Achr9P03090_001	Banana	cytosol	46.84	32.74
Solyc08g066770.2.1	Tomato	cytosol	25.64	24.71
Solyc07g061740.2.1	Tomato	mitochondrion, plasma membrane	18.29	20.7
Solyc07g061760.1.1	Tomato	cytosol	9.4	20.52
Solyc07g061750.2.1	Tomato	cytosol	19.66	19.83

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:K4D3P1	PFAM:PF00023	PFAM:PF12796
PFAM:PF13962	InterPro:PGG_dom	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24177	PANTHER:PTHR24177:SF107
SMART:SM00248	SUPFAM:SSF48403	EnsemblPlantsGene:Solyc10g084550.1	EnsemblPlants:Solyc10g084550.1.1	TMHMM:TMhelix	UniParc:UPI000276A3F8
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:64028208..64030933

Molecular Weight (calculated)

63706.0 Da

IEP (calculated)

9.940

GRAVY (calculated)

-0.117

Length

585 amino acids

Sequence
(BLAST)

001: MNYAGEPSSS PSPRAPALVV SHSSKALIPS NSGKALFVSN SGKALLLSNS GKRMDPTGKK KYVKQVTGRH NDTELHLAAQ RGDVGAVRDI LGEIDAQMLK
101: TMSGAEFDAE VAEIREAMVN EVNELGETAL FTAAERGYID VVKELLPYST KEGITTKNRS GLDPLHIAAN QGHQAIVKLL LEHEPELSRT VGQSNATPLV
201: SAATKGHTSV VHELLSKDSS LLEISRSNGK NALHLSARQG HVDIVQALLD KDPQLARRTD KKGQTALHMA VKGVSCEVVK LLLQADPAIV MLPDKFGNTA
301: LHIATRKKRS EIVQELLMLD DTNVNALTRE NKTALDIAEG LPMSEESTEL KECLQRYGAC RANELNQPRD ELRKTVTEIK INVHSQLEQA RRTNKNMTGI
401: AKELQKLHRE GINTATNSVT IVASLFATVA FAAIFTVPGG DLDSGYAVAS NTPAFKIFYI TNALALFTSL AVVVVQITVV RGETKSEKRV IGVINKLMWL
501: AAVFTSLAFV SASYVVIGKR NIWAAIFVTV VAGIIMAGVL GAMTYYVVKS KRIRKIRKRE KFTRTRTNSF HTEFSDSDVN PMFAL

Best Arabidopsis Sequence Match ( AT3G09550.2 )
(BLAST)

001: MKKKKRQPKK RIEEEKELEP GMEKGLATDP TSPTGSTVAD LSPTPTPRKT LVLSNSGKAL MVSNSSKSLG LSNSGKRFDP TGKKKYVKQV TGRHNDTELH
101: LAAQRGDLAS VKQILSDIDS QITGTITGAD FDDEVAQIMT SVVNEVNELG ETPLFTAAEK GNIDVVKELL PYTTIESLMQ KNLSGFDALH IACSQGHRSI
201: VQLLLEHEPQ LSKTVAQSNA TPLVSAATRG HSEVVNELLA KDSSLLEISR SNGKNALHLA ARQGHVDIVR TLLDKDPQLA RRTDKKGQTS LHMAVKGVSS
301: QVVRLLLRAD PAIVMLPDKF GNTVLHIATR KKRAEIVNEL LQLPDTNVNA LTRDHKTAYD IAEGLTHSEE TAEIKEILSR CGALKANELN QPRDELRKTV
401: TEIKKDVHTQ LEQTRKTNKN VDGIAKELRK LHRAGINNAT NSVTVVAVLF ATVAFAAIFT VPGGDDDHGV AVMVHATSFK IFFIFNAIAL FTSLAVVVVQ
501: ITLVRGETKT ERRVVEVINK LMWLASVCTT VAFISSSYIV VGRRNRYAAV VVTVIGTVTM TGILSIMTYY VVKSKRTRIV RKKEKKKSAR NGTSSWHHAN
601: PSETESEVNP IYAI

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLR6]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.