Factsheet for GSMUA_Achr5P07190_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P15350_001	Banana	cytosol, plastid	88.97	83.87
GSMUA_Achr11P...	Banana	cytosol	77.76	83.3
GSMUA_Achr9P04170_001	Banana	cytosol	77.95	80.39
GSMUA_Achr6P33220_001	Banana	cytosol	81.94	78.79
GSMUA_Achr6P34410_001	Banana	cytosol	73.57	75.88
KRG92972	Soybean	cytosol	77.0	69.23
Bra038714.1-P	Field mustard	cytosol, plastid	75.48	68.8
Solyc05g054830.2.1	Tomato	nucleus	76.05	68.49
Bra034760.1-P	Field mustard	cytosol	76.05	68.38
CDY42145	Canola	cytosol	76.05	68.38
PGSC0003DMT400060447	Potato	cytosol, nucleus, plasma membrane	75.67	68.15
AT3G12360.1	Thale cress	cytosol	76.43	68.14
VIT_13s0067g03880.t01	Wine grape	cytosol	76.24	68.08
CDY50335	Canola	cytosol	75.86	67.74
KRH36223	Soybean	cytosol	76.05	67.57
CDY50551	Canola	cytosol	75.48	67.4
CDY07932	Canola	nucleus, plastid	74.9	65.78
VIT_08s0040g02750.t01	Wine grape	cytosol, peroxisome, plasma membrane	79.47	65.52
CDX73985	Canola	nucleus	74.9	64.7
Bra001304.1-P	Field mustard	nucleus	74.9	64.7
AT3G09550.2	Thale cress	cytosol, nucleus, plasma membrane	75.29	64.5
Os03t0281000-01	Rice	nucleus, peroxisome, plasma membrane	81.18	62.61
Solyc10g084550.1.1	Tomato	plastid	69.58	62.56
Zm00001d028679_P002	Maize	cytosol, nucleus, plasma membrane	81.94	62.28
Zm00001d047772_P002	Maize	plastid	82.32	62.21
EER95067	Sorghum	cytosol, nucleus, plasma membrane	80.04	61.19
PGSC0003DMT400028722	Potato	cytosol, plastid	70.72	60.98
TraesCS4B01G202400.2	Wheat	cytosol, nucleus, plasma membrane	80.23	60.81
CDY08436	Canola	cytosol	76.05	60.61
HORVU4Hr1G058480.2	Barley	cytosol, nucleus, plasma membrane	80.04	60.58
TraesCS4D01G203300.1	Wheat	cytosol, nucleus, plasma membrane	80.42	59.83
TraesCS4A01G102200.2	Wheat	nucleus	79.85	58.17
GSMUA_Achr7P23720_001	Banana	cytosol, peroxisome, plasma membrane	20.91	47.01
GSMUA_Achr8P02120_001	Banana	cytosol	46.2	45.17
GSMUA_Achr5P05930_001	Banana	cytosol, plasma membrane	41.83	42.39
GSMUA_Achr6P33230_001	Banana	cytosol	45.63	40.47
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	43.54	39.69
GSMUA_Achr7P23730_001	Banana	cytosol	22.05	36.59
GSMUA_Achr9P04150_001	Banana	plasma membrane	44.87	35.87
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plasma membrane, plastid	43.92	35.54
GSMUA_Achr9P03090_001	Banana	cytosol	55.7	35.01
GSMUA_Achr9P02740_001	Banana	cytosol	22.24	19.93
GSMUA_Achr9P02720_001	Banana	cytosol	14.07	19.02
GSMUA_Achr9P02700_001	Banana	cytosol	13.88	18.96
GSMUA_Achr9P02690_001	Banana	plasma membrane	19.77	18.06
GSMUA_Achr7P12630_001	Banana	cytosol	21.86	17.67

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr5G07190_001
EnsemblPlants:GSMUA_Achr5P07190_001	EnsemblPlants:GSMUA_Achr5T07190_001	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M0SWE8
PFAM:PF00023	PFAM:PF12796	PFAM:PF13962	InterPro:PGG_dom	PFscan:PS50088	PFscan:PS50297
PANTHER:PTHR24177	PANTHER:PTHR24177:SF107	SMART:SM00248	SUPFAM:SSF48403	TMHMM:TMhelix	UniParc:UPI0002966544
SEG:seg	:	:	:	:	:

Description

Ankyrin repeat-containing protein At3g12360 [Source:GMGC_GENE;Acc:GSMUA_Achr5G07190_001]

Coordinates

chr5:+:5199428..5203436

Molecular Weight (calculated)

57930.1 Da

IEP (calculated)

10.345

GRAVY (calculated)

-0.098

Length

526 amino acids

Sequence
(BLAST)

001: MDQATSPKTA PALVLSNSGK RIDPSRKKKY VKQVTGRHND TELHLAAQRG DLAAVRQILG QIDAQETPLF IAADKGFLDI VVELLKYSDQ DSLCRKNRSG
101: FDALHVAARE GHQAIIQVLL DHDPTLIKTF GQSNATPLIS AAIRGHTEVV NLLLKRDASL LELSKTNGKN ALHFAARQGH VEIVTALLEK DPQLARRTDK
201: KGQTALHMAV KGTSCEVVNA LVDADPAIVM LPDRAGNTAL HVATRKKRAE IVKVLLHLRD TNVNALTRDH KTALDIAESL PLSEESAEIK EWLSRYDAVR
301: ANELNQPRDE LRKTVTEIKK DVHTQLEQTR KTNKNVYGIA KELRKLHREG INNATNSVTV VAVLFATVAF AAIFTVPGGT EDTGIAIVVR SGSFKIFFIF
401: NAVALFTSLA VVVVQITLVR GETKAERRVV EVINKLMWLA SVCTTVSFIA SSYIVLGRHN QWAAFLVTVI GGVIMTGVLG TMTFYVVRSK RTRSIRKRAK
501: SLKSGTSSWH HNSELSDSEV DRIYAI

Best Arabidopsis Sequence Match ( AT3G12360.2 )
(BLAST)

001: MEKGGMILLQ SSENQNPMID PSPTPSPSAT ATAPALVLSN SGKRMDQAGK KKYVKQVTGR HNDTELHLAA QRGDLAAVQQ ILKDINSQME GILSGEEFDA
101: EVAEIRASIV NEVNELGETA LFTAADKGHL DVVKELLKYS SRESIAKKNR SGYDPLHIAA IQGHHAIVEV LLDHDATLSQ TFGPSNATPL VSAAMRGHTE
201: VVNQLLSKAG NLLEISRSNN KNALHLAARQ GHVEVIKALL SKDPQLARRI DKKGQTALHM AVKGQSSEVV KLLLDADPAI VMQPDKSCNT ALHVATRKKR
301: AEIVELLLSL PDTNANTLTR DHKTALDIAE GLPLSEESSY IKECLARSGA LRANELNQPR DELRSTVTQI KNDVHIQLEQ TKRTNKNVHN ISKELRKLHR
401: EGINNATNSV TVVAVLFATV AFAAIFTVPG GDNNDGSAVV VGRASFKIFF IFNALALFTS LAVVVVQITL VRGETKAEKR VVEVINKLMW LASMCTSVAF
501: LASSYIVVGR KNEWAAELVT VVGGVIMAGV LGTMTYYVVK SKRTRSMRKK VKSARRSGSN SWHHSDFSNS EVDPIFAI

Arabidopsis Description

ITN1Ankyrin repeat-containing protein ITN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.