Factsheet for PGSC0003DMT400028722

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
plastid 4
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g084550.1.1	Tomato	plastid	93.77	97.78
CDY07932	Canola	nucleus, plastid	69.51	70.78
GSMUA_Achr5P07190_001	Banana	cytosol	60.98	70.72
PGSC0003DMT400060447	Potato	cytosol, nucleus, plasma membrane	67.38	70.38
Bra001304.1-P	Field mustard	nucleus	69.84	69.95
CDX73985	Canola	nucleus	69.84	69.95
VIT_08s0040g02750.t01	Wine grape	cytosol, peroxisome, plasma membrane	73.11	69.91
GSMUA_Achr11P...	Banana	cytosol	56.23	69.86
AT3G09550.2	Thale cress	cytosol, nucleus, plasma membrane	69.67	69.22
GSMUA_Achr9P04170_001	Banana	cytosol	57.54	68.82
GSMUA_Achr6P34410_001	Banana	cytosol	57.21	68.43
GSMUA_Achr7P15350_001	Banana	cytosol, plastid	62.46	68.28
GSMUA_Achr6P33220_001	Banana	cytosol	59.18	66.0
Zm00001d042948_P001	Maize	cytosol	57.05	62.48
EES03848	Sorghum	cytosol	56.56	62.05
Os01t0837000-01	Rice	cytosol	56.56	62.05
TraesCS3A01G354800.1	Wheat	cytosol	55.41	60.9
TraesCS3B01G387800.2	Wheat	cytosol	55.25	60.83
TraesCS3D01G348800.2	Wheat	cytosol	55.25	60.72
HORVU3Hr1G087050.1	Barley	cytosol	54.92	60.58
Os03t0281000-01	Rice	nucleus, peroxisome, plasma membrane	64.26	57.48
Zm00001d047772_P002	Maize	plastid	65.25	57.18
EER95067	Sorghum	cytosol, nucleus, plasma membrane	64.26	56.98
Zm00001d028679_P002	Maize	cytosol, nucleus, plasma membrane	64.59	56.94
TraesCS4B01G202400.2	Wheat	cytosol, nucleus, plasma membrane	63.77	56.05
HORVU4Hr1G058480.2	Barley	cytosol, nucleus, plasma membrane	63.77	55.97
TraesCS4D01G203300.1	Wheat	cytosol, nucleus, plasma membrane	64.1	55.3
TraesCS4A01G102200.2	Wheat	nucleus	63.77	53.88
PGSC0003DMT400078144	Potato	cytosol	39.02	44.49
PGSC0003DMT400040191	Potato	cytosol	38.52	43.84
PGSC0003DMT400025094	Potato	cytosol	38.03	42.96
PGSC0003DMT400061439	Potato	cytosol, peroxisome, plasma membrane	37.38	42.14
PGSC0003DMT400051426	Potato	plasma membrane	34.59	40.34
PGSC0003DMT400075256	Potato	cytosol	37.21	40.32
PGSC0003DMT400064924	Potato	cytosol	35.41	39.2
PGSC0003DMT400052568	Potato	cytosol	36.23	38.7
GSMUA_Achr9P03090_001	Banana	cytosol	46.07	33.57
PGSC0003DMT400031466	Potato	cytosol, peroxisome, plasma membrane	22.95	25.0
PGSC0003DMT400011032	Potato	cytosol, peroxisome, plasma membrane	22.3	24.73
PGSC0003DMT400011023	Potato	cytosol	24.59	24.31
PGSC0003DMT400071072	Potato	cytosol	11.97	19.73

Protein Annotations

Gene3D:1.25.40.20	Gene3D:1.25.40.960	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M1ARK9	PFAM:PF12796
PFAM:PF13962	InterPro:PGG_dom	EnsemblPlantsGene:PGSC0003DMG400011056	PGSC:PGSC0003DMG400011056	EnsemblPlants:PGSC0003DMT400028722	PFscan:PS50088
PFscan:PS50297	PANTHER:PTHR24177	PANTHER:PTHR24177:SF107	SMART:SM00248	SUPFAM:SSF48403	TMHMM:TMhelix
UniParc:UPI0002966459	SEG:seg	:	:	:	:

Description

Ankyrin repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011056]

Coordinates

chr10:+:54611079..54614967

Molecular Weight (calculated)

66311.1 Da

IEP (calculated)

9.917

GRAVY (calculated)

-0.152

Length

610 amino acids

Sequence
(BLAST)

001: MSSINQQGSM DLEMGLPPAP HPISNMNYAG EPSSSPSPRA PALVVSHSSK ALIPSNSGKA LFVSNSGKAL LLSNSGKRLD PTGKKKYVKQ VTGRHNDTEL
101: HLAAQRGDVG AVRDILGEID AQMLKTMSGA EFDAEVAEIR EAMVNEVNEL GETALFTAAE RGYIDVVKEL LPYSTKEGIT TKNRSGLDPL HIAANQGHQA
201: IVKLLLEHEP ELSKTVAQSN ATPLVSAATK GHTSVVHELL SKDSSLLEIS RSNGKNALHL SARQGHVDIV QALLEKDPQL ARRTDKKGQT ALHMAVKGVS
301: NEVVKLLLQA DPAIVMLPDK FGNTALHIAT RKKRSEIVQE LLMLDDTNVN ALTREHKTAL DIAEGLPMSE ESTELKECLT RYGACRANEL NQPRDELRKT
401: VTEIKKNVHS QLEQARKTNK NMTGIAKELQ KLHREGINTA TNSVTIVASL FATVAFAAIF TVPGGDLDSG YAVASNTPAF KIFYITNALA LFTSLAVVVV
501: QITVVRGETK SEKRVIGVIN KLMWLAAVFT NLAFVSASYV VIGKRNIWAA IFVTVVAGII MAGVLGAMTY YVVKSKRTRK IRKREKFTRT RTNSFHTELS
601: DSDLNPMFAL

Best Arabidopsis Sequence Match ( AT3G09550.2 )
(BLAST)

001: MKKKKRQPKK RIEEEKELEP GMEKGLATDP TSPTGSTVAD LSPTPTPRKT LVLSNSGKAL MVSNSSKSLG LSNSGKRFDP TGKKKYVKQV TGRHNDTELH
101: LAAQRGDLAS VKQILSDIDS QITGTITGAD FDDEVAQIMT SVVNEVNELG ETPLFTAAEK GNIDVVKELL PYTTIESLMQ KNLSGFDALH IACSQGHRSI
201: VQLLLEHEPQ LSKTVAQSNA TPLVSAATRG HSEVVNELLA KDSSLLEISR SNGKNALHLA ARQGHVDIVR TLLDKDPQLA RRTDKKGQTS LHMAVKGVSS
301: QVVRLLLRAD PAIVMLPDKF GNTVLHIATR KKRAEIVNEL LQLPDTNVNA LTRDHKTAYD IAEGLTHSEE TAEIKEILSR CGALKANELN QPRDELRKTV
401: TEIKKDVHTQ LEQTRKTNKN VDGIAKELRK LHRAGINNAT NSVTVVAVLF ATVAFAAIFT VPGGDDDHGV AVMVHATSFK IFFIFNAIAL FTSLAVVVVQ
501: ITLVRGETKT ERRVVEVINK LMWLASVCTT VAFISSSYIV VGRRNRYAAV VVTVIGTVTM TGILSIMTYY VVKSKRTRIV RKKEKKKSAR NGTSSWHHAN
601: PSETESEVNP IYAI

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLR6]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.