Factsheet for PGSC0003DMT400025094

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005240.2.1	Tomato	cytosol	79.07	94.89
PGSC0003DMT400040191	Potato	cytosol	73.7	74.25
PGSC0003DMT400078144	Potato	cytosol	71.67	72.34
VIT_06s0004g03980.t01	Wine grape	cytosol, nucleus, plasma membrane	68.33	68.08
KRH22984	Soybean	cytosol	68.7	68.07
KRH10329	Soybean	cytosol	68.7	68.07
KRH25003	Soybean	cytosol, plastid	68.52	67.52
KRG88671	Soybean	cytosol, plastid	67.96	66.85
AT1G07710.1	Thale cress	cytosol, peroxisome, plasma membrane	65.56	65.19
Bra018683.1-P	Field mustard	cytosol	64.44	64.56
CDX95126	Canola	cytosol	64.07	64.07
CDX93618	Canola	cytosol	33.89	63.54
GSMUA_Achr8P02120_001	Banana	cytosol	62.41	62.64
CDY55069	Canola	cytosol, peroxisome, plasma membrane	27.41	61.67
TraesCS4D01G203200.1	Wheat	cytosol	60.56	60.56
TraesCS4B01G202300.1	Wheat	cytosol	60.56	60.56
CDX88738	Canola	plastid	60.0	60.45
CDX71059	Canola	plastid	60.74	60.07
Bra006680.1-P	Field mustard	plastid	60.74	60.07
PGSC0003DMT400061439	Potato	cytosol, peroxisome, plasma membrane	59.81	59.7
TraesCS4A01G102300.1	Wheat	cytosol	60.19	59.52
AT5G60070.1	Thale cress	cytosol, plastid	60.19	59.31
GSMUA_Achr6P33230_001	Banana	cytosol	63.7	58.01
Os03t0281100-00	Rice	cytosol	60.0	57.35
Zm00001d028680_P001	Maize	cytosol	58.7	56.41
EER95066	Sorghum	cytosol	57.96	55.2
GSMUA_Achr9P04150_001	Banana	plasma membrane	62.41	51.22
PGSC0003DMT400075256	Potato	cytosol	50.0	47.96
PGSC0003DMT400064924	Potato	cytosol	48.15	47.19
CDX99605	Canola	cytosol	24.44	46.32
PGSC0003DMT400052568	Potato	cytosol	48.89	46.23
CDY59983	Canola	cytosol	25.19	45.03
CDX73200	Canola	cytosol	25.19	45.03
HORVU4Hr1G058450.9	Barley	plastid	50.37	44.23
PGSC0003DMT400051426	Potato	plasma membrane	41.85	43.21
PGSC0003DMT400060447	Potato	cytosol, nucleus, plasma membrane	43.52	40.24
PGSC0003DMT400028722	Potato	cytosol, plastid	42.96	38.03
PGSC0003DMT400031466	Potato	cytosol, peroxisome, plasma membrane	23.89	23.04
PGSC0003DMT400011032	Potato	cytosol, peroxisome, plasma membrane	23.15	22.73
PGSC0003DMT400011023	Potato	cytosol	25.74	22.53
PGSC0003DMT400071072	Potato	cytosol	13.15	19.19

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:At2g01680/At5g02620
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M1AKZ6	PFAM:PF12796	PFAM:PF13962
InterPro:PGG_dom	EnsemblPlantsGene:PGSC0003DMG400009690	PGSC:PGSC0003DMG400009690	EnsemblPlants:PGSC0003DMT400025094	PFscan:PS50088	PFscan:PS50297
PANTHER:PTHR24186	PANTHER:PTHR24186:SF10	SMART:SM00248	SUPFAM:SSF48403	TMHMM:TMhelix	UniParc:UPI0002948F5D
SEG:seg	:	:	:	:	:

Description

Ankyrin repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009690]

Coordinates

chr6:+:6408077..6411232

Molecular Weight (calculated)

59243.8 Da

IEP (calculated)

9.346

GRAVY (calculated)

-0.061

Length

540 amino acids

Sequence
(BLAST)

001: MDPPAARPVA PRKKMTKQLT GKRDDSSLHA AARSGNLVAI REILDETGEE DLAEMMIKQN SAGETALYVA AEYGYYQLVR DMIHYYDLVA AGIKARNGYD
101: ALHIAAKQGD LDMVKVLMEA HPELSMTVDI SNTTALHTAA NQGHIEVVNY LLEAESSLAT IAKSNGKTAL HSAARNGHLQ VVKALLNKEP GIATRMDKKG
201: QTALHMAVKG QNLEVVEELT RADPSLINMV DNKGNTALHI AARKGRDQIV KLLLAQNETD TRVVNRSNES ALDTAEKLGQ SELVTVLQEH GVQSARSIKP
301: QTKNPARELK KTVSDIKHGV HYQLETTALT RRRIQDIAKR VYKMHAQGLN NAINSTTVVA VLIATVAFGG IFQINGQWVD DPDDIPADHS LGEANIGPNP
401: AFVVFFIFDS LSLFIALAVV VVQTTIVVIE SRAKKKMMSI INKLMWVACL FISIAYLSLS YIVVGDANLW MPVLISFIGA IIMATTLGTL CYWIVMNRIS
501: SSNKRSLRKN SMANRSRSWS ASLLSDSDAL NNEYKKIYAI

Best Arabidopsis Sequence Match ( AT1G07710.2 )
(BLAST)

001: MEGEEDTVAG SSIPKKKMMK QLTGKRDDTL LHSAVRHGNK DRVVEILTKT RESELNQLLG KQNQSGETAL YVAAEYGDVE IVKEMINCYD LALVEIKARN
101: GFDAFHIAAK QGDLDVLKVL AEAHSELAMT VDLSNTTALH TAATQGHTEV VNFLLELGSS LAGIAKSNGK TALHSASRNG HVKVIKALLA SEPAIAIRMD
201: KKGQTALHMA VKGTNVEVVE ELIKADRSSI NIADTKGNTA LHIAARKGRS QIVKLLLANN MTDTKAVNRS GETALDTAEK IGNPEVALIL QKHGVPSAKT
301: IKPSGPNPAR ELKQTVSDIK HEVHNQLEHT RLTRKRVQGI AKQLNKMHTE GLNNAINSTT VVAVLIATVA FAAIFTVPGQ YVEDTSKIPD GHSLGEANIA
401: STTPFIIFFI FDSIALFISL AVVVVQTSVV VIESKAKKQM MAVINKLMWL ACVLISVAFL ALSFVVVGEE EKWLAIWVTA IGATIMITTL GTMCYWIIQH
501: KIEAANLRNI RRSSINSISG SWGIPQLTDS DILQNECKKM YAI

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LQP7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.