Factsheet for Bra006680.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88738	Canola	plastid	97.99	99.81
CDX71059	Canola	plastid	99.63	99.63
AT5G60070.1	Thale cress	cytosol, plastid	92.86	92.52
Bra018683.1-P	Field mustard	cytosol	68.31	69.2
VIT_06s0004g03980.t01	Wine grape	cytosol, nucleus, plasma membrane	67.95	68.45
KRH22984	Soybean	cytosol	67.95	68.07
KRH10329	Soybean	cytosol	67.77	67.89
KRG88671	Soybean	cytosol, plastid	67.03	66.67
KRH25003	Soybean	cytosol, plastid	66.67	66.42
Solyc06g075600.2.1	Tomato	cytosol, peroxisome, plasma membrane	64.1	65.42
PGSC0003DMT400078144	Potato	cytosol	63.92	65.23
Solyc11g072960.1.1	Tomato	cytosol	62.27	64.03
GSMUA_Achr8P02120_001	Banana	cytosol	62.64	63.57
PGSC0003DMT400040191	Potato	cytosol	62.27	63.43
TraesCS4B01G202300.1	Wheat	cytosol	61.72	62.41
TraesCS4D01G203200.1	Wheat	cytosol	61.72	62.41
Os03t0281100-00	Rice	cytosol	63.19	61.06
TraesCS4A01G102300.1	Wheat	cytosol	60.99	60.99
PGSC0003DMT400025094	Potato	cytosol	60.07	60.74
Zm00001d028680_P001	Maize	cytosol	59.52	57.83
GSMUA_Achr6P33230_001	Banana	cytosol	62.45	57.5
Bra009576.1-P	Field mustard	cytosol	54.95	56.93
Solyc06g005240.2.1	Tomato	cytosol	46.89	56.89
EER95066	Sorghum	cytosol	57.88	55.73
GSMUA_Achr9P04150_001	Banana	plasma membrane	60.62	50.3
Bra030618.1-P	Field mustard	cytosol	54.03	48.2
HORVU4Hr1G058450.9	Barley	plastid	54.03	47.97
Bra021752.1-P	Field mustard	cytosol	55.68	46.7
Bra005639.1-P	Field mustard	cytosol, nucleus, plasma membrane, plastid	52.38	46.35
Bra038714.1-P	Field mustard	cytosol, plastid	44.69	42.29
Bra034760.1-P	Field mustard	cytosol	45.05	42.05
Bra024863.1-P	Field mustard	cytosol	38.28	39.21
Bra001304.1-P	Field mustard	nucleus	43.41	38.92
Bra029009.1-P	Field mustard	cytosol	17.22	21.27
Bra000823.1-P	Field mustard	plasma membrane	16.12	19.82
Bra001112.1-P	Field mustard	cytosol, peroxisome, plasma membrane	20.33	19.27
Bra018444.1-P	Field mustard	cytosol	20.88	19.22
Bra018445.1-P	Field mustard	cytosol	20.88	19.13
Bra023774.1-P	Field mustard	plasma membrane	20.7	18.52
Bra034209.1-P	Field mustard	cytosol	20.7	18.11
Bra032143.1-P	Field mustard	cytosol, peroxisome, plasma membrane	10.26	17.83
Bra020727.1-P	Field mustard	cytosol, peroxisome, plasma membrane	19.78	17.65
Bra033416.1-P	Field mustard	cytosol	17.03	16.58
Bra034211.1-P	Field mustard	cytosol, nucleus, plasma membrane	19.78	15.06
Bra034210.1-P	Field mustard	cytosol, nucleus, plasma membrane	17.95	13.9

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:At2g01680/At5g02620
EnsemblPlantsGene:Bra006680	EnsemblPlants:Bra006680.1	EnsemblPlants:Bra006680.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036770	UniProt:M4CR39	PFAM:PF12796	PFAM:PF13606	PFAM:PF13962	InterPro:PGG_dom
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24186	PANTHER:PTHR24186:SF10	SMART:SM00248	SUPFAM:SSF48403
TMHMM:TMhelix	UniParc:UPI0002540213	SEG:seg	:	:	:

Description

AT5G60070 (E=1e-252) | ankyrin repeat family protein

Coordinates

chrA03:+:4603242..4605285

Molecular Weight (calculated)

59397.6 Da

IEP (calculated)

8.163

GRAVY (calculated)

-0.089

Length

546 amino acids

Sequence
(BLAST)

001: MEEASTSTST PVAAKPTVVK KTMSKQFTGK REDSPLHSAV RRGDFSAVKK ILSDHIESEE ELRELLQKQN QCGETALYVA AEYGDAEVVA ELIKYYDLDD
101: AETKARNGFD PFHIAAKQGE LEVLRVLMEE HPELAMTVDL SNTTALHTAA AQGHVEVVEY LLEAAGSSLA AIAKSNGKTA LHSAARNGHA EVVKAIVAVE
201: PDTATRTDKK GQTALHMAVK GQSLDVVVEL MKGHRSSLNM VDSKGNTALH VATRKGRTKI VELLLENNET STKAINRAGE TPLDTAEKTG HPQLAAVLKT
301: RGVPSAKSIN NTTRPNPARE LKQTVSDIKH EVHDQLEHAR ETRKRVQGIA KRINKMHVEG LDNAINSTTV VAVLIATVAF AAIFTVPGQY ADERSTLTPG
401: QSLGEANIAD NPAFAIFFIF DSIALFISLG VVVVQTSVVA IEHKAKKNMM AIINKLMWLA CVLISVAFLA LAFVVVGEDE RWLAVGVTVF GATIMLTTLG
501: TMCYWVIRHR IEASNVRSAR RESMARTRQS GLMDFSGILT KRMYAI

Best Arabidopsis Sequence Match ( AT5G60070.1 )
(BLAST)

001: MEEASTSTPA PMAAKPTVVK KTMAKQFTGK REDSQLLSAV RRGDFSAVKE ILSNHMESED ELRDLLRKQN QCGETALYVA AEYGDADVVA ELIKYYDLED
101: AETKARNGFD PFHIAAKQGE LDVLRVLMEE HPELSMTVDL SNTTALHTAA AQGHVEVVEY LLEAAGSSLA AIAKSNGKTA LHSAARNGHA EVVKAIVAVE
201: PDTATRTDKK GQTPLHMAVK GQSIDVVVEL MKGHRSSLNM ADSKGNTALH VATRKGRIKI VELLLDNNET SPSTKAINRA GETPLDTAEK TGHPQIAAVL
301: KTRGVPSAKA INNTTRPNAA RELKQTVSDI KHEVHHQLEH ARETRKRVQG IAKRINKMHV EGLDNAINST TVVAVLIATV AFAAIFTVPG QYADELSSLL
401: PGQSLGEANI ADRPAFAIFF IFDSIALFIS LAVVVVQTSV VAIEHKAKKN MMAVINKLMW LACVLISVAF LALAFVVVGE EERWLAVGVT VFGATIMLTT
501: LGTMCYWVIM HRIEASNVRK SRKESMARSR QSGLLEFSGI LTKRMYAI

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LVG7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.