Factsheet for PGSC0003DMT400078144

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g075600.2.1	Tomato	cytosol, peroxisome, plasma membrane	97.57	97.57
CDX93618	Canola	cytosol	40.19	74.65
KRH22984	Soybean	cytosol	75.14	73.76
KRH10329	Soybean	cytosol	74.58	73.21
PGSC0003DMT400040191	Potato	cytosol	72.71	72.57
VIT_06s0004g03980.t01	Wine grape	cytosol, nucleus, plasma membrane	72.9	71.96
PGSC0003DMT400025094	Potato	cytosol	72.34	71.67
Bra018683.1-P	Field mustard	cytosol	71.96	71.43
KRH25003	Soybean	cytosol, plastid	72.9	71.17
AT1G07710.1	Thale cress	cytosol, peroxisome, plasma membrane	71.78	70.72
CDX95126	Canola	cytosol	71.22	70.56
KRG88671	Soybean	cytosol, plastid	72.15	70.31
CDY55069	Canola	cytosol, peroxisome, plasma membrane	30.84	68.75
GSMUA_Achr8P02120_001	Banana	cytosol	67.85	67.47
AT5G60070.1	Thale cress	cytosol, plastid	65.98	64.42
TraesCS4D01G203200.1	Wheat	cytosol	64.86	64.26
TraesCS4B01G202300.1	Wheat	cytosol	64.86	64.26
CDX88738	Canola	plastid	64.11	63.99
CDX71059	Canola	plastid	65.23	63.92
Bra006680.1-P	Field mustard	plastid	65.23	63.92
PGSC0003DMT400061439	Potato	cytosol, peroxisome, plasma membrane	63.55	62.85
TraesCS4A01G102300.1	Wheat	cytosol	64.11	62.82
GSMUA_Achr6P33230_001	Banana	cytosol	68.78	62.06
Os03t0281100-00	Rice	cytosol	64.67	61.24
Zm00001d028680_P001	Maize	cytosol	64.11	61.03
EER95066	Sorghum	cytosol	62.8	59.26
GSMUA_Achr9P04150_001	Banana	plasma membrane	67.1	54.56
CDX99605	Canola	cytosol	28.04	52.63
CDY59983	Canola	cytosol	29.53	52.32
CDX73200	Canola	cytosol	29.35	51.99
PGSC0003DMT400052568	Potato	cytosol	54.77	51.31
PGSC0003DMT400064924	Potato	cytosol	51.96	50.45
PGSC0003DMT400075256	Potato	cytosol	52.71	50.09
HORVU4Hr1G058450.9	Barley	plastid	55.7	48.46
PGSC0003DMT400051426	Potato	plasma membrane	43.36	44.36
PGSC0003DMT400060447	Potato	cytosol, nucleus, plasma membrane	45.98	42.12
PGSC0003DMT400028722	Potato	cytosol, plastid	44.49	39.02
PGSC0003DMT400011032	Potato	cytosol, peroxisome, plasma membrane	25.05	24.36
PGSC0003DMT400031466	Potato	cytosol, peroxisome, plasma membrane	25.23	24.11
PGSC0003DMT400011023	Potato	cytosol	27.1	23.5
PGSC0003DMT400071072	Potato	cytosol	12.15	17.57

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:102586057	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:At2g01680/At5g02620	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M1CZG6	PFAM:PF12796
PFAM:PF13637	PFAM:PF13962	InterPro:PGG_dom	EnsemblPlantsGene:PGSC0003DMG400030393	PGSC:PGSC0003DMG400030393	EnsemblPlants:PGSC0003DMT400078144
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24186	PANTHER:PTHR24186:SF10	SMART:SM00248	SUPFAM:SSF48403
TMHMM:TMhelix	UniParc:UPI000295A430	RefSeq:XP_006350741.1	RefSeq:XP_015165688.1	SEG:seg	:

Description

Ankyrin repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030393]

Coordinates

chr6:-:56283292..56285669

Molecular Weight (calculated)

58660.7 Da

IEP (calculated)

10.029

GRAVY (calculated)

0.004

Length

535 amino acids

Sequence
(BLAST)

001: MEASMPPKRM KKQLTGKRED SVLHRLARAG NLVEIRGIID NTGEKELTEL LVKQNSAGET SLYVAAEYGY CDLVKEMIKY YDLAAAGIKA RNGFDALHIA
101: AKQGDLDVVK VLMMVHPELS MTVDVANTTA LHSAANQGHI QMVNYLLEAE SSLATIAKSN GKTALHSASR NGHVEVVKAL LYKEPRMASR TDKKGQTALH
201: MAVKGQNLEV VEELIRADAK LINIIDTKGN TALHIASRKG RAQIVKFLLG QNETDTKAVN RSKETALDTA EKMGQANIAV ILQEAGVQSA RAIKPQTTNP
301: ARQLKQTVSD IKHEVHYQME HTRQTRKRIH GIAKRLDKMH AEGLNNAINS TTVVAVLIAT VAFAAIFSVP GQYIEYPEDV PPGHSLGEAN IAPTPSFLIF
401: LVFDSFALFI SLAVVVVQTS IVVIESKAKK QMMAIINKLM WLACVLISVA FLALSYVVVG KNEKWLAIVV TIIGTAILVT TLGTMCYWVI MHRIESSNKR
501: TIRKNSLASR SLSWSASVVS DSDVLNNKNK KMYAI

Best Arabidopsis Sequence Match ( AT1G07710.2 )
(BLAST)

001: MEGEEDTVAG SSIPKKKMMK QLTGKRDDTL LHSAVRHGNK DRVVEILTKT RESELNQLLG KQNQSGETAL YVAAEYGDVE IVKEMINCYD LALVEIKARN
101: GFDAFHIAAK QGDLDVLKVL AEAHSELAMT VDLSNTTALH TAATQGHTEV VNFLLELGSS LAGIAKSNGK TALHSASRNG HVKVIKALLA SEPAIAIRMD
201: KKGQTALHMA VKGTNVEVVE ELIKADRSSI NIADTKGNTA LHIAARKGRS QIVKLLLANN MTDTKAVNRS GETALDTAEK IGNPEVALIL QKHGVPSAKT
301: IKPSGPNPAR ELKQTVSDIK HEVHNQLEHT RLTRKRVQGI AKQLNKMHTE GLNNAINSTT VVAVLIATVA FAAIFTVPGQ YVEDTSKIPD GHSLGEANIA
401: STTPFIIFFI FDSIALFISL AVVVVQTSVV VIESKAKKQM MAVINKLMWL ACVLISVAFL ALSFVVVGEE EKWLAIWVTA IGATIMITTL GTMCYWIIQH
501: KIEAANLRNI RRSSINSISG SWGIPQLTDS DILQNECKKM YAI

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LQP7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.