Factsheet for PGSC0003DMT400064924

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g014570.2.1	Tomato	cytosol, peroxisome, plasma membrane	97.64	95.73
PGSC0003DMT400052568	Potato	cytosol	83.3	80.39
PGSC0003DMT400075256	Potato	cytosol	81.85	80.11
KRH27553	Soybean	cytosol, peroxisome, plasma membrane	33.58	72.83
KRG97307	Soybean	cytosol	73.14	72.22
KRH69034	Soybean	cytosol	73.5	71.55
VIT_05s0094g01320.t01	Wine grape	cytosol	73.32	69.18
CDY58363	Canola	cytosol	68.06	67.45
CDY15549	Canola	cytosol	66.24	65.41
GSMUA_Achr7P23720_001	Banana	cytosol, peroxisome, plasma membrane	27.77	65.38
KRH64845	Soybean	cytosol	63.52	63.29
TraesCS7D01G268900.1	Wheat	cytosol	60.07	60.18
TraesCS7B01G166600.1	Wheat	cytosol	60.07	60.18
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	62.98	60.14
HORVU7Hr1G056430.1	Barley	cytosol	59.89	59.89
CDY19113	Canola	cytosol	68.42	59.75
TraesCS5A01G305200.1	Wheat	cytosol	61.16	59.65
Bra030618.1-P	Field mustard	cytosol	66.24	59.64
TraesCS7A01G265800.1	Wheat	cytosol	59.53	59.64
EES15259	Sorghum	cytosol	60.8	59.61
Zm00001d031706_P001	Maize	cytosol	60.62	59.54
TraesCS5B01G305700.1	Wheat	cytosol	60.98	59.47
HORVU5Hr1G079730.3	Barley	cytosol	60.8	59.29
TraesCS5D01G312200.1	Wheat	cytosol	60.62	59.12
Os09t0518500-01	Rice	cytosol	60.07	58.9
EER97054	Sorghum	cytosol	59.89	58.72
Os08t0542700-01	Rice	cytosol	59.35	58.71
AT1G05640.1	Thale cress	cytosol	66.61	58.53
Zm00001d006142_P002	Maize	cytosol	59.53	58.36
Zm00001d006147_P002	Maize	cytosol	59.53	58.36
Bra021752.1-P	Field mustard	cytosol	68.6	58.06
Zm00001d021169_P002	Maize	cytosol	59.89	57.59
CDY42071	Canola	cytosol, nucleus, plasma membrane, plastid	64.97	57.56
AT2G31820.1	Thale cress	cytosol, nucleus, plasma membrane	68.78	57.25
CDY34515	Canola	cytosol, nucleus, plasma membrane, plastid	64.43	56.62
Bra005639.1-P	Field mustard	cytosol, nucleus, plasma membrane, plastid	63.16	56.4
GSMUA_Achr7P23730_001	Banana	cytosol	32.3	56.15
CDX86566	Canola	cytosol	57.89	55.29
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plasma membrane, plastid	63.7	54.0
PGSC0003DMT400078144	Potato	cytosol	50.45	51.96
PGSC0003DMT400061439	Potato	cytosol, peroxisome, plasma membrane	50.82	51.76
PGSC0003DMT400040191	Potato	cytosol	48.09	49.44
PGSC0003DMT400025094	Potato	cytosol	47.19	48.15
PGSC0003DMT400051426	Potato	plasma membrane	42.47	44.74
PGSC0003DMT400060447	Potato	cytosol, nucleus, plasma membrane	39.56	37.33
PGSC0003DMT400028722	Potato	cytosol, plastid	39.2	35.41
PGSC0003DMT400011032	Potato	cytosol, peroxisome, plasma membrane	24.32	24.36
PGSC0003DMT400031466	Potato	cytosol, peroxisome, plasma membrane	24.5	24.11
PGSC0003DMT400011023	Potato	cytosol	26.5	23.66
PGSC0003DMT400071072	Potato	cytosol	13.25	19.73

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	UniProt:M1CD40	PFAM:PF12796	PFAM:PF13962	InterPro:PGG_dom
EnsemblPlantsGene:PGSC0003DMG400025214	PGSC:PGSC0003DMG400025214	EnsemblPlants:PGSC0003DMT400064924	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24186
PANTHER:PTHR24186:SF8	SMART:SM00248	SUPFAM:SSF48403	TMHMM:TMhelix	UniParc:UPI0002966C15	SEG:seg

Description

Ankyrin repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025214]

Coordinates

chr8:+:8036524..8040068

Molecular Weight (calculated)

60444.9 Da

IEP (calculated)

10.144

GRAVY (calculated)

0.019

Length

551 amino acids

Sequence
(BLAST)

001: MEKQQNGVME KQKSFRIVME RQVSFSIEKK RDKESPGKRG DAPLHLAARA GNLGKVKEII QKFDNSKGVK ELLSLQNQQG ETALYIAAEN GHTLVVVEIL
101: KHLDLQVASL VANNGYDAFH VAAKQGHLEV LKELLHSFPN LVMATDSSNS TALHTAAAQG HVDVVNLLLE IDSNLAKIAR NNGKTVLHTA ARMGHLEIVK
201: SLLSKDPEIG FRTDSKGQSA LHMAVKGQNV GIVLELIKPN PSVLALEDNK ANRALHIATK KGRPQMVQCL ISIECIDLNA INKAGETALD IAEKFGMPEV
301: VSILKVAGAA HSKDHGKPPN NTKQLKQTVS DIRHDVQSQL QQSRQTGFKV RKIAKKVKKL HISGLNNAIN NATVVAVLIA TVAFAAIFTV PGQYVEQKKD
401: GFSLGEANVA DKAAFIIFFL FDSMALFISI AVVVVQTSLV VIEPRAKKLL VFWINRLMWA ACLFISVSFI SLAYVVVGSK ERWLAIFATV IGSTIMITTI
501: GSMCYCVVRH RLEESKMRNI RRAGTHSHSY AMSVASDTEL YGESYKRMYA V

Best Arabidopsis Sequence Match ( AT2G31820.1 )
(BLAST)

001: MTIMEEKQNN SPVGEKQQSF NGIIINQTQE NQTKSMEKQQ SFRCVVENQP RKARALEKQV SFQGVNVENY QQSRLGRSME KQQSFRGVNV ENHKRGVMEK
101: LPSFGRATME RQKSFRGGFL EKQKSFRVVM ERQLSFIGER RKKNESPGKR GDSSLHIAAR TGNLSKVKEL IRGCGDELKE LLSKQNLEGE TPLYTAAENG
201: HSIVVEEMLK HMDLETASIA ARNGFDPFHV AAKQGHLEVL KILLETFPNL AMTTDLSCTT ALHTAATQGH IDVVNLLLET DSNLAKIAKN NGKTALHSAA
301: RMGHVEVVKS LIGKDPSIGF RTDKKGQTAL HMAVKGQNDG IVVELVKPDV AVLSVEDNKG NTPLHIATNK GRIKIVRCLV SFEGINLNPI NKAGDTPLDV
401: SEKIGNAELV SVLKEAGAAT AKDLGKPQNP AKQLKQTVSD IKHEVQSQLQ QSRQTGVRVQ KIAKRLKKLH ISGLNNAINS ATVVAVLIAT VAFAAIFTIP
501: GQYEEDRSKG ELLGQAHIAN KAPFLVFFIF DSLALFISLA VVVVQTSVVV IEQKAKKKLV FVINKLMWCA CLFISIAFVS LSYIVVGKEE MWLAVCATVI
601: GGTIMLTTIG AMCYCVVMHR MEESKLRSIR KERSKSQSFS MSRMPSDSDI LNGEYNKRMY AL

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9SKB8]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.