Factsheet for PGSC0003DMT400075256

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g096670.1.1	Tomato	cytosol	97.16	95.3
PGSC0003DMT400064924	Potato	cytosol	80.11	81.85
PGSC0003DMT400052568	Potato	cytosol	82.77	81.61
KRG97307	Soybean	cytosol	71.94	72.58
KRH69034	Soybean	cytosol	72.11	71.73
VIT_05s0094g01320.t01	Wine grape	cytosol	74.25	71.58
KRH27553	Soybean	cytosol, peroxisome, plasma membrane	31.97	70.87
CDY58363	Canola	cytosol	68.38	69.24
GSMUA_Achr7P23720_001	Banana	cytosol, peroxisome, plasma membrane	27.35	65.81
CDY15549	Canola	cytosol	65.19	65.77
KRH64845	Soybean	cytosol	61.63	62.75
CDY19113	Canola	cytosol	68.92	61.49
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	62.52	61.01
TraesCS7D01G268900.1	Wheat	cytosol	58.79	60.18
TraesCS7B01G166600.1	Wheat	cytosol	58.61	60.0
HORVU7Hr1G056430.1	Barley	cytosol	58.61	59.89
Bra030618.1-P	Field mustard	cytosol	65.01	59.8
Bra021752.1-P	Field mustard	cytosol	69.09	59.75
TraesCS7A01G265800.1	Wheat	cytosol	58.26	59.64
AT1G05640.1	Thale cress	cytosol	66.25	59.49
TraesCS5B01G305700.1	Wheat	cytosol	59.33	59.12
TraesCS5A01G305200.1	Wheat	cytosol	59.33	59.12
AT2G31820.1	Thale cress	cytosol, nucleus, plasma membrane	69.27	58.91
HORVU5Hr1G079730.3	Barley	cytosol	58.97	58.76
Os08t0542700-01	Rice	cytosol	58.08	58.71
CDY42071	Canola	cytosol, nucleus, plasma membrane, plastid	64.83	58.68
TraesCS5D01G312200.1	Wheat	cytosol	58.79	58.58
Zm00001d031706_P001	Maize	cytosol	58.26	58.47
EES15259	Sorghum	cytosol	58.26	58.36
CDY34515	Canola	cytosol, nucleus, plasma membrane, plastid	64.48	57.89
Zm00001d006147_P002	Maize	cytosol	57.73	57.83
Zm00001d006142_P002	Maize	cytosol	57.73	57.83
EER97054	Sorghum	cytosol	57.73	57.83
Bra005639.1-P	Field mustard	cytosol, nucleus, plasma membrane, plastid	62.88	57.37
Os09t0518500-01	Rice	cytosol	57.02	57.12
Zm00001d021169_P002	Maize	cytosol	57.73	56.72
CDX86566	Canola	cytosol	57.9	56.5
GSMUA_Achr7P23730_001	Banana	cytosol	31.62	56.15
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plasma membrane, plastid	63.23	54.77
PGSC0003DMT400078144	Potato	cytosol	50.09	52.71
PGSC0003DMT400061439	Potato	cytosol, peroxisome, plasma membrane	49.56	51.57
PGSC0003DMT400040191	Potato	cytosol	47.78	50.19
PGSC0003DMT400025094	Potato	cytosol	47.96	50.0
PGSC0003DMT400051426	Potato	plasma membrane	38.54	41.49
PGSC0003DMT400060447	Potato	cytosol, nucleus, plasma membrane	40.67	39.21
PGSC0003DMT400028722	Potato	cytosol, plastid	40.32	37.21
PGSC0003DMT400031466	Potato	cytosol, peroxisome, plasma membrane	25.04	25.18
PGSC0003DMT400011032	Potato	cytosol, peroxisome, plasma membrane	24.33	24.91
PGSC0003DMT400011023	Potato	cytosol	26.82	24.47
PGSC0003DMT400071072	Potato	cytosol	12.43	18.92

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	UniProt:M1CUU2	PFAM:PF12796	PFAM:PF13962	InterPro:PGG_dom
EnsemblPlantsGene:PGSC0003DMG400029269	PGSC:PGSC0003DMG400029269	EnsemblPlants:PGSC0003DMT400075256	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24186
PANTHER:PTHR24186:SF8	SMART:SM00248	SUPFAM:SSF48403	TMHMM:TMhelix	UniParc:UPI0002956B3B	SEG:seg

Description

Ankyrin repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029269]

Coordinates

chr12:-:58261858..58266713

Molecular Weight (calculated)

62062.7 Da

IEP (calculated)

9.786

GRAVY (calculated)

-0.060

Length

563 amino acids

Sequence
(BLAST)

001: MEKQQSFRNG AMEKQKSFRG IMEKQKSFRI AMERQMSFGG ERKRGKDSPG KRGDSPLHLA ARAGNLGKVK EIVQKFDEKG IKDLLCQQNQ EGETALYVAA
101: ENGHCLVVAE FLKHLDLEIA SIVANNGYDT LHVAARQGHL DVLQELLHSF PNLVMTTDSS NSTALHTAAA QGHIHVVNML LEIDSNLAKI ARNNGKTVLH
201: TAARMGHLEI VRSVLSKDPE IGFRTDKKGQ TALHMAAKGQ NVDIVLELIK PNPAVLALED NKGNTALHIA TRKGRIQMVQ CLISIEGIDL NTLNKAGETV
301: LEIAEKFGTP ELVSILKEAG ATHSKDHGKP PGPAKQLKQS VSDIKHDVHS QLQQSQQTGF KVRKIAMKVK KLHISGLNNA INNATVVAVL IATVAFAAIF
401: TVPGQYVENE TDGFSLGEAH IGRKAAFIIF FLFDSMALFI SVAVVVVQTS VVVIEQKAKK RLMFWINKLM WAACLFISVA FISLSYVVVG AKERWLAVYA
501: TVVGCIIMLT TFGSMCYCVV QHRLEESRLR NIRRTETNSR SFPLSVASDP ELCSENYKRM YAV

Best Arabidopsis Sequence Match ( AT2G31820.1 )
(BLAST)

001: MTIMEEKQNN SPVGEKQQSF NGIIINQTQE NQTKSMEKQQ SFRCVVENQP RKARALEKQV SFQGVNVENY QQSRLGRSME KQQSFRGVNV ENHKRGVMEK
101: LPSFGRATME RQKSFRGGFL EKQKSFRVVM ERQLSFIGER RKKNESPGKR GDSSLHIAAR TGNLSKVKEL IRGCGDELKE LLSKQNLEGE TPLYTAAENG
201: HSIVVEEMLK HMDLETASIA ARNGFDPFHV AAKQGHLEVL KILLETFPNL AMTTDLSCTT ALHTAATQGH IDVVNLLLET DSNLAKIAKN NGKTALHSAA
301: RMGHVEVVKS LIGKDPSIGF RTDKKGQTAL HMAVKGQNDG IVVELVKPDV AVLSVEDNKG NTPLHIATNK GRIKIVRCLV SFEGINLNPI NKAGDTPLDV
401: SEKIGNAELV SVLKEAGAAT AKDLGKPQNP AKQLKQTVSD IKHEVQSQLQ QSRQTGVRVQ KIAKRLKKLH ISGLNNAINS ATVVAVLIAT VAFAAIFTIP
501: GQYEEDRSKG ELLGQAHIAN KAPFLVFFIF DSLALFISLA VVVVQTSVVV IEQKAKKKLV FVINKLMWCA CLFISIAFVS LSYIVVGKEE MWLAVCATVI
601: GGTIMLTTIG AMCYCVVMHR MEESKLRSIR KERSKSQSFS MSRMPSDSDI LNGEYNKRMY AL

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9SKB8]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.