Factsheet for PGSC0003DMT400040191

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072960.1.1	Tomato	cytosol	96.46	97.36
PGSC0003DMT400025094	Potato	cytosol	74.25	73.7
PGSC0003DMT400078144	Potato	cytosol	72.57	72.71
KRH10329	Soybean	cytosol	72.2	71.01
KRH22984	Soybean	cytosol	72.01	70.83
VIT_06s0004g03980.t01	Wine grape	cytosol, nucleus, plasma membrane	70.15	69.37
KRH25003	Soybean	cytosol, plastid	70.34	68.8
KRG88671	Soybean	cytosol, plastid	70.15	68.49
Bra018683.1-P	Field mustard	cytosol	65.86	65.49
AT1G07710.1	Thale cress	cytosol, peroxisome, plasma membrane	66.04	65.19
CDX95126	Canola	cytosol	65.67	65.19
TraesCS4B01G202300.1	Wheat	cytosol	64.93	64.44
TraesCS4D01G203200.1	Wheat	cytosol	64.74	64.26
GSMUA_Achr8P02120_001	Banana	cytosol	64.37	64.13
CDX93618	Canola	cytosol	34.33	63.89
CDY55069	Canola	cytosol, peroxisome, plasma membrane	28.54	63.75
TraesCS4A01G102300.1	Wheat	cytosol	64.18	63.0
CDX88738	Canola	plastid	62.69	62.69
CDX71059	Canola	plastid	63.43	62.27
Bra006680.1-P	Field mustard	plastid	63.43	62.27
AT5G60070.1	Thale cress	cytosol, plastid	62.13	60.77
Os03t0281100-00	Rice	cytosol	63.25	60.0
Zm00001d028680_P001	Maize	cytosol	62.13	59.25
PGSC0003DMT400061439	Potato	cytosol, peroxisome, plasma membrane	59.33	58.78
GSMUA_Achr6P33230_001	Banana	cytosol	64.74	58.52
EER95066	Sorghum	cytosol	61.01	57.67
GSMUA_Achr9P04150_001	Banana	plasma membrane	63.06	51.37
CDX99605	Canola	cytosol	25.93	48.77
CDY59983	Canola	cytosol	27.43	48.68
CDX73200	Canola	cytosol	27.24	48.34
PGSC0003DMT400064924	Potato	cytosol	49.44	48.09
PGSC0003DMT400052568	Potato	cytosol	51.12	47.99
PGSC0003DMT400075256	Potato	cytosol	50.19	47.78
HORVU4Hr1G058450.9	Barley	plastid	53.36	46.5
PGSC0003DMT400051426	Potato	plasma membrane	42.91	43.98
PGSC0003DMT400060447	Potato	cytosol, nucleus, plasma membrane	44.96	41.27
PGSC0003DMT400028722	Potato	cytosol, plastid	43.84	38.52
PGSC0003DMT400011032	Potato	cytosol, peroxisome, plasma membrane	24.81	24.18
PGSC0003DMT400031466	Potato	cytosol, peroxisome, plasma membrane	23.88	22.86
PGSC0003DMT400011023	Potato	cytosol	26.31	22.85
PGSC0003DMT400071072	Potato	cytosol	13.62	19.73

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:102579928	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
InterPro:At2g01680/At5g02620	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M1B9H7	PFAM:PF12796
PFAM:PF13962	InterPro:PGG_dom	EnsemblPlantsGene:PGSC0003DMG400015550	PGSC:PGSC0003DMG400015550	EnsemblPlants:PGSC0003DMT400040191	PFscan:PS50088
PFscan:PS50297	PANTHER:PTHR24186	PANTHER:PTHR24186:SF10	SMART:SM00248	SUPFAM:SSF48403	TMHMM:TMhelix
UniParc:UPI000294CFB3	RefSeq:XP_006363351.1	SEG:seg	:	:	:

Description

Ankyrin repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015550]

Coordinates

chr11:-:45123335..45126767

Molecular Weight (calculated)

58872.4 Da

IEP (calculated)

8.717

GRAVY (calculated)

-0.063

Length

536 amino acids

Sequence
(BLAST)

001: MEAPAAQPTT PRKKMTKQLT GKRDDSALHS AARAGNLVAI KNTIEDTDEE ELAELLIKQN SAGETPLYVA AEYGYYEVVR EMIMYYDLVA AGIKARNGFD
101: ALHIAAKQGD LDVVKVLMEA HPELAMTVDV VNTTALHTAA NQGHIEMVNY LLEEQSSLAT IAKSNGKTAL HSSARNGHLQ VLKALLSKEP GIATRMDNKG
201: QTALHMAVKG QNLEVVEELT NADPSLVNMV DNKGNTPLHI ASRKGRAEVV KLLLSQNETD VKVINRSHET ALDTAEKMSQ ADTVAILQEY GVQSARVLKP
301: QATNPARELK QTVSDIKHEV HDQLKHTKQT RKRIQGIAKR LHKMHREGLN NAINSTTVVA VLIATVAFAG IFQVPGQYYM DPDNLPEGHI IGEANISNHP
401: GFLVFFVFDS IALFISLAVV VVQTTVVVIE SKAKKKLMSI INKLMWIACV FVSVAYLALS FVVVGTRYWV MAVIVTVLGA TIMASTIGVM LYWVIKHRIE
501: SSNKKSMRKN SMASKSMDYS DSALSDDNNE FKIYAL

Best Arabidopsis Sequence Match ( AT1G07710.2 )
(BLAST)

001: MEGEEDTVAG SSIPKKKMMK QLTGKRDDTL LHSAVRHGNK DRVVEILTKT RESELNQLLG KQNQSGETAL YVAAEYGDVE IVKEMINCYD LALVEIKARN
101: GFDAFHIAAK QGDLDVLKVL AEAHSELAMT VDLSNTTALH TAATQGHTEV VNFLLELGSS LAGIAKSNGK TALHSASRNG HVKVIKALLA SEPAIAIRMD
201: KKGQTALHMA VKGTNVEVVE ELIKADRSSI NIADTKGNTA LHIAARKGRS QIVKLLLANN MTDTKAVNRS GETALDTAEK IGNPEVALIL QKHGVPSAKT
301: IKPSGPNPAR ELKQTVSDIK HEVHNQLEHT RLTRKRVQGI AKQLNKMHTE GLNNAINSTT VVAVLIATVA FAAIFTVPGQ YVEDTSKIPD GHSLGEANIA
401: STTPFIIFFI FDSIALFISL AVVVVQTSVV VIESKAKKQM MAVINKLMWL ACVLISVAFL ALSFVVVGEE EKWLAIWVTA IGATIMITTL GTMCYWIIQH
501: KIEAANLRNI RRSSINSISG SWGIPQLTDS DILQNECKKM YAI

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LQP7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.