Factsheet for Solyc06g005240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025094	Potato	cytosol	94.89	79.07
Solyc11g072960.1.1	Tomato	cytosol	70.0	59.32
Solyc06g075600.2.1	Tomato	cytosol, peroxisome, plasma membrane	68.67	57.76
CDX93618	Canola	cytosol	36.0	56.25
CDY55069	Canola	cytosol, peroxisome, plasma membrane	29.11	54.58
VIT_06s0004g03980.t01	Wine grape	cytosol, nucleus, plasma membrane	65.11	54.06
KRH25003	Soybean	cytosol, plastid	65.33	53.65
KRH22984	Soybean	cytosol	64.89	53.58
KRH10329	Soybean	cytosol	64.22	53.03
KRG88671	Soybean	cytosol, plastid	64.22	52.64
AT1G07710.1	Thale cress	cytosol, peroxisome, plasma membrane	62.0	51.38
Bra018683.1-P	Field mustard	cytosol	61.33	51.21
CDX95126	Canola	cytosol	61.11	50.93
GSMUA_Achr8P02120_001	Banana	cytosol	59.33	49.63
TraesCS4B01G202300.1	Wheat	cytosol	58.44	48.7
TraesCS4D01G203200.1	Wheat	cytosol	58.22	48.52
TraesCS4A01G102300.1	Wheat	cytosol	57.78	47.62
CDX88738	Canola	plastid	56.0	47.01
Solyc09g005860.2.1	Tomato	cytosol, peroxisome, plasma membrane	56.44	46.95
CDX71059	Canola	plastid	56.89	46.89
Bra006680.1-P	Field mustard	plastid	56.89	46.89
AT5G60070.1	Thale cress	cytosol, plastid	56.89	46.72
GSMUA_Achr6P33230_001	Banana	cytosol	60.44	45.87
Os03t0281100-00	Rice	cytosol	57.56	45.84
Zm00001d028680_P001	Maize	cytosol	56.22	45.02
EER95066	Sorghum	cytosol	55.78	44.27
GSMUA_Achr9P04150_001	Banana	plasma membrane	58.22	39.82
CDX99605	Canola	cytosol	25.11	39.65
CDY59983	Canola	cytosol	26.22	39.07
CDX73200	Canola	cytosol	26.0	38.74
Solyc12g096670.1.1	Tomato	cytosol	48.44	37.98
Solyc08g014570.2.1	Tomato	cytosol, peroxisome, plasma membrane	45.78	36.65
Solyc12g019060.1.1	Tomato	cytosol	46.0	36.32
Solyc01g005340.2.1	Tomato	plasma membrane	40.0	34.42
HORVU4Hr1G058450.9	Barley	plastid	46.0	33.66
Solyc05g054830.2.1	Tomato	nucleus	40.44	31.16
Solyc10g084550.1.1	Tomato	plastid	40.22	30.94
Solyc08g066770.2.1	Tomato	cytosol	25.11	18.62
Solyc07g061740.2.1	Tomato	mitochondrion, plasma membrane	16.89	14.7
Solyc07g061750.2.1	Tomato	cytosol	18.0	13.97
Solyc07g061760.1.1	Tomato	cytosol	6.89	11.57

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:At2g01680/At5g02620
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:K4C308	PFAM:PF12796	PFAM:PF13962
InterPro:PGG_dom	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24186	PANTHER:PTHR24186:SF10	SMART:SM00248
SUPFAM:SSF48403	EnsemblPlantsGene:Solyc06g005240.2	EnsemblPlants:Solyc06g005240.2.1	TMHMM:TMhelix	UniParc:UPI0002765B24	SEG:seg

Description

No Description!

Coordinates

chr6:-:259127..261919

Molecular Weight (calculated)

49938.6 Da

IEP (calculated)

9.619

GRAVY (calculated)

-0.078

Length

450 amino acids

Sequence
(BLAST)

001: MDPQAAKPVA PRKKMTKQLT GKRDDSSLHA AARSGNLVAI REILDETGEE DLAEMLIKQN SAGETALYVA AEYGYYQLVR DMIHYYDLVA AGIKARNGYD
101: ALHIAAKQGD LDMVKVLMEA HPELSMTELT RADPSLINMV DNKGNTALHI AARKGRDQIV KLLLVQNETD TRVVNRSNES ALDTAEKLGQ PELVTVLQEH
201: GVQSARSIKP QTTNPARELK KTVSDIKHGV HYQLETTALT RRRIQEIAKR VYKMHAQGLN NAINSTTVVA VLIATVAFGG IFQINGQWVD DPDDIPPDHT
301: LGEANIGPKP AFVVFFIFNS LSLFISLAVV VVQTTIVVIE SRAKKKMMSI INKLMWVACL FISIAYLSLS YIVVGNHNLW MPVLISVLGA VIMSTTFGTL
401: CYWIVMNRVR SSNKRSLRKN SMNNRSRSWS ASVLSDSDAL NNEYKKIYAI

Best Arabidopsis Sequence Match ( AT1G07710.1 )
(BLAST)

001: MEGEEDTVAG SSIPKKKMMK QLTGKRDDTL LHSAVRHGNK DRVVEILTKT RESELNQLLG KQNQSGETAL YVAAEYGDVE IVKEMINCYD LALVEIKARN
101: GFDAFHIAAK QGDLDVLKVL AEAHSELAMT VDLSNTTALH TAATQGHTEV VNFLLELGSS LAGIAKSNGK TALHSASRNG HVKVIKALLA SEPAIAIRMD
201: KKGQTALHMA VKGTNVEVVE ELIKADRSSI NIADTKGNTA LHIAARKGRS QIVKLLLANN MTDTKAVNRS GETALDTAEK IGNPEVALIL QKHGVPSAKT
301: IKPSGPNPAR ELKQTVSDIK HEVHNQLEHT RLTRKRVQGI AKQLNKMHTE GLNNAINSTT VVAVLIATVA FAAIFTVPGQ YVEDTSKIPD GHSLGEANIA
401: STTPFIIFFI FDSIALFISL AVVVVQTSVV VIESKAKKQM MAVINKLMWL ACVLISVAFL ALSFVVVGEE EKWLAIWVTA IGATIMITTL GTMCYWIIQH
501: KIEAANLRNI RRSSINSISG SWGIPQLTDS DILQNECKKM YAI

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LQP7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.