Factsheet for Solyc12g019060.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052568	Potato	cytosol	97.72	97.55
Solyc12g096670.1.1	Tomato	cytosol	83.51	82.93
Solyc08g014570.2.1	Tomato	cytosol, peroxisome, plasma membrane	80.7	81.85
KRG97307	Soybean	cytosol	73.16	74.73
KRH69034	Soybean	cytosol	72.98	73.5
VIT_05s0094g01320.t01	Wine grape	cytosol	74.39	72.6
KRH27553	Soybean	cytosol, peroxisome, plasma membrane	31.58	70.87
CDY58363	Canola	cytosol	68.77	70.5
CDY15549	Canola	cytosol	65.79	67.2
GSMUA_Achr7P23720_001	Banana	cytosol, peroxisome, plasma membrane	26.67	64.96
KRH64845	Soybean	cytosol	62.28	64.2
CDY19113	Canola	cytosol	70.18	63.39
Bra030618.1-P	Field mustard	cytosol	67.02	62.42
Bra021752.1-P	Field mustard	cytosol	70.7	61.9
TraesCS7B01G166600.1	Wheat	cytosol	59.65	61.82
TraesCS7D01G268900.1	Wheat	cytosol	59.47	61.64
AT1G05640.1	Thale cress	cytosol	67.72	61.56
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	62.28	61.53
CDY42071	Canola	cytosol, nucleus, plasma membrane, plastid	67.02	61.41
HORVU7Hr1G056430.1	Barley	cytosol	59.3	61.34
TraesCS7A01G265800.1	Wheat	cytosol	58.95	61.09
TraesCS5A01G305200.1	Wheat	cytosol	60.35	60.88
AT2G31820.1	Thale cress	cytosol, nucleus, plasma membrane	70.7	60.88
Zm00001d031706_P001	Maize	cytosol	59.82	60.78
CDY34515	Canola	cytosol, nucleus, plasma membrane, plastid	66.84	60.77
TraesCS5B01G305700.1	Wheat	cytosol	60.18	60.71
HORVU5Hr1G079730.3	Barley	cytosol	60.0	60.53
EES15259	Sorghum	cytosol	59.65	60.5
TraesCS5D01G312200.1	Wheat	cytosol	59.82	60.35
EER97054	Sorghum	cytosol	59.47	60.32
Bra005639.1-P	Field mustard	cytosol, nucleus, plasma membrane, plastid	65.26	60.29
Zm00001d006147_P002	Maize	cytosol	59.12	59.96
Zm00001d006142_P002	Maize	cytosol	59.12	59.96
Os08t0542700-01	Rice	cytosol	58.6	59.96
Os09t0518500-01	Rice	cytosol	58.95	59.79
Zm00001d021169_P002	Maize	cytosol	59.47	59.16
CDX86566	Canola	cytosol	59.3	58.58
GSMUA_Achr7P23730_001	Banana	cytosol	32.11	57.73
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plasma membrane, plastid	63.33	55.54
Solyc06g075600.2.1	Tomato	cytosol, peroxisome, plasma membrane	50.88	54.21
Solyc09g005860.2.1	Tomato	cytosol, peroxisome, plasma membrane	49.3	51.94
Solyc11g072960.1.1	Tomato	cytosol	48.07	51.6
Solyc06g005240.2.1	Tomato	cytosol	36.32	46.0
Solyc01g005340.2.1	Tomato	plasma membrane	40.0	43.59
Solyc05g054830.2.1	Tomato	nucleus	39.65	38.7
Solyc10g084550.1.1	Tomato	plastid	38.42	37.44
Solyc08g066770.2.1	Tomato	cytosol	26.32	24.71
Solyc07g061760.1.1	Tomato	cytosol	10.0	21.27
Solyc07g061740.2.1	Tomato	mitochondrion, plasma membrane	18.77	20.7
Solyc07g061750.2.1	Tomato	cytosol	18.6	18.28

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	UniProt:K4DDD3	PFAM:PF12796	PFAM:PF13857	PFAM:PF13962
InterPro:PGG_dom	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24186	PANTHER:PTHR24186:SF8	SMART:SM00248
SUPFAM:SSF48403	EnsemblPlantsGene:Solyc12g019060.1	EnsemblPlants:Solyc12g019060.1.1	TMHMM:TMhelix	UniParc:UPI00027696EA	SEG:seg

Description

No Description!

Coordinates

chr12:+:9071679..9076116

Molecular Weight (calculated)

62735.3 Da

IEP (calculated)

10.127

GRAVY (calculated)

-0.094

Length

570 amino acids

Sequence
(BLAST)

001: MEKQISFHGV IEKQQSFRNG TMEKQRSFRG LMEKQKSFRI AMERQLSFGG ERKRGKESPG KRGDSPLHLA IRAGNLGKVK EIVHSKSTND LLSKQNQEGE
101: TVLYVAAENG HSLVVAELLK HLDLQTASIL ANNGFDAFHI AAKQGHLEVL KELLHSFPNL VMTTDSANST ALHTAAAQGH LDVVNLLLEI DSNLAKIARN
201: NGKTILHTAA RMGHLEIVRS LLSKDPEIGF RTDKKGQSAL HMAVKGQNFD IVLELVKPNP AVLALEDNKG NRALHVATIK GRPQMVQCLI SIEGIDLNAV
301: NKAGDTALDI AEKSGSPQLI SILKEAGATR SKDDGRPPTA AKQLKQTVSD IRHDVESQLQ HSRQTGFRVR KIAKNVKKLH ISGLNNAINN ATVVAVLIAT
401: VAFAAIFTVP GQYIEEKADG VSLGEAHIAR KASFIIFFLF DSMALFISIA VVVVQTSVVV IEQKAKKQLM FWINKLMWAA CLSISISFIS LTYVVVGEKE
501: RALAIYATVI GSTIMLTTIG SMCYCVVRHR LEESRMRSIR RAETHSHSYS MSVASDTELY SENYKRMYAV

Best Arabidopsis Sequence Match ( AT2G31820.1 )
(BLAST)

001: MTIMEEKQNN SPVGEKQQSF NGIIINQTQE NQTKSMEKQQ SFRCVVENQP RKARALEKQV SFQGVNVENY QQSRLGRSME KQQSFRGVNV ENHKRGVMEK
101: LPSFGRATME RQKSFRGGFL EKQKSFRVVM ERQLSFIGER RKKNESPGKR GDSSLHIAAR TGNLSKVKEL IRGCGDELKE LLSKQNLEGE TPLYTAAENG
201: HSIVVEEMLK HMDLETASIA ARNGFDPFHV AAKQGHLEVL KILLETFPNL AMTTDLSCTT ALHTAATQGH IDVVNLLLET DSNLAKIAKN NGKTALHSAA
301: RMGHVEVVKS LIGKDPSIGF RTDKKGQTAL HMAVKGQNDG IVVELVKPDV AVLSVEDNKG NTPLHIATNK GRIKIVRCLV SFEGINLNPI NKAGDTPLDV
401: SEKIGNAELV SVLKEAGAAT AKDLGKPQNP AKQLKQTVSD IKHEVQSQLQ QSRQTGVRVQ KIAKRLKKLH ISGLNNAINS ATVVAVLIAT VAFAAIFTIP
501: GQYEEDRSKG ELLGQAHIAN KAPFLVFFIF DSLALFISLA VVVVQTSVVV IEQKAKKKLV FVINKLMWCA CLFISIAFVS LSYIVVGKEE MWLAVCATVI
601: GGTIMLTTIG AMCYCVVMHR MEESKLRSIR KERSKSQSFS MSRMPSDSDI LNGEYNKRMY AL

Arabidopsis Description

Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9SKB8]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.