Factsheet for Solyc05g054830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
plastid 1
nucleus 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060447	Potato	cytosol, nucleus, plasma membrane	98.63	98.63
GSMUA_Achr5P07190_001	Banana	cytosol	68.49	76.05
GSMUA_Achr11P...	Banana	cytosol	63.53	75.56
GSMUA_Achr7P15350_001	Banana	cytosol, plastid	71.23	74.55
GSMUA_Achr9P04170_001	Banana	cytosol	64.9	74.31
GSMUA_Achr6P33220_001	Banana	cytosol	67.12	71.66
GSMUA_Achr6P34410_001	Banana	cytosol	62.33	71.37
Solyc10g084550.1.1	Tomato	plastid	69.52	69.4
TraesCS3A01G354800.1	Wheat	cytosol	63.01	66.31
Os01t0837000-01	Rice	cytosol	63.01	66.19
HORVU3Hr1G087050.1	Barley	cytosol	62.5	66.0
TraesCS3B01G387800.2	Wheat	cytosol	62.5	65.88
EES03848	Sorghum	cytosol	62.67	65.83
TraesCS3D01G348800.2	Wheat	cytosol	62.33	65.59
Zm00001d042948_P001	Maize	cytosol	62.5	65.53
Os03t0281000-01	Rice	nucleus, peroxisome, plasma membrane	73.29	62.76
EER95067	Sorghum	cytosol, nucleus, plasma membrane	72.26	61.34
Zm00001d028679_P002	Maize	cytosol, nucleus, plasma membrane	72.43	61.13
TraesCS4B01G202400.2	Wheat	cytosol, nucleus, plasma membrane	72.26	60.81
HORVU4Hr1G058480.2	Barley	cytosol, nucleus, plasma membrane	72.09	60.58
Zm00001d047772_P002	Maize	plastid	72.09	60.49
TraesCS4D01G203300.1	Wheat	cytosol, nucleus, plasma membrane	72.77	60.11
TraesCS4A01G102200.2	Wheat	nucleus	72.09	58.31
Solyc06g075600.2.1	Tomato	cytosol, peroxisome, plasma membrane	42.47	46.36
Solyc11g072960.1.1	Tomato	cytosol	40.41	44.44
Solyc09g005860.2.1	Tomato	cytosol, peroxisome, plasma membrane	40.75	43.99
Solyc01g005340.2.1	Tomato	plasma membrane	39.38	43.98
Solyc12g096670.1.1	Tomato	cytosol	40.07	40.77
Solyc06g005240.2.1	Tomato	cytosol	31.16	40.44
Solyc08g014570.2.1	Tomato	cytosol, peroxisome, plasma membrane	38.36	39.86
Solyc12g019060.1.1	Tomato	cytosol	38.7	39.65
GSMUA_Achr9P03090_001	Banana	cytosol	50.86	35.48
Solyc08g066770.2.1	Tomato	cytosol	26.2	25.21
Solyc07g061760.1.1	Tomato	cytosol	9.25	20.15
Solyc07g061740.2.1	Tomato	mitochondrion, plasma membrane	16.95	19.15
Solyc07g061750.2.1	Tomato	cytosol	18.49	18.62

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005886	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009628
GO:GO:0009651	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0034613	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	UniProt:K4C2G0	PFAM:PF00023	PFAM:PF12796	PFAM:PF13962
InterPro:PGG_dom	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24177	PANTHER:PTHR24177:SF107	SMART:SM00248
SUPFAM:SSF48403	EnsemblPlantsGene:Solyc05g054830.2	EnsemblPlants:Solyc05g054830.2.1	TMHMM:TMhelix	UniParc:UPI0002766CC3	SEG:seg

Description

Ankyrin repeat-containing protein ITN1 [Source:Projected from Arabidopsis thaliana (AT3G12360) UniProtKB/Swiss-Prot;Acc:Q9C7A2]

Coordinates

chr5:+:64642455..64646929

Molecular Weight (calculated)

63776.9 Da

IEP (calculated)

9.524

GRAVY (calculated)

-0.148

Length

584 amino acids

Sequence
(BLAST)

001: MASPVEEGER DVEKGLITPT PSHNPLAEPS PTPSPSSATA PALVLSNSGK RIDQAGKKKY VKQVTGRHND TELHLAAQKG DLAAVKQILN DIDSQMVGTL
101: SGDDFNQEVA EIRASVVNEV NELGETALFT AAAKGYLEVL KELLKYCNKD TVTKKNRSGF DPLHIAASQG HHGIVQLLLE HDTGLSKTFG PSNATPLITA
201: ASRGHIAVVN ELLSKDCTLL EISRSNGKNA LHLAARQGHV EIVKALLDRD PQLARRTDKK GQTALHMAVK GISCEVVILL LEADAAIVML PDKFGNTALH
301: IATRKKRAEI VRELLRLPDS NVNALNRDHK TALDIAEDLP LSEESSEIKE CLYKYGAVRA NELNQPRDEL RKTVSQIKKD IHTQLEQTKR TNKNVHGIAK
401: ELRKLHREGI NNATNSVTVV AVLFATVAFA AIFTVPGGDD EHGVAVVVST ASFKIFFIFN ALALFTSLAV VVVQITLVRG ETKAERKVVE VINKLMWLAS
501: VCTSVAFMAS SYIVVGRKYE WAAILVTAVG GIIMAGVLGT MTYYVVRSRK KRSIRKKEKH ARSGSNSWYH SEFSNSDIDR IYAL

Best Arabidopsis Sequence Match ( AT3G12360.1 )
(BLAST)

001: MAASSYVDGE RDMEKGGMIL LQSSENQNPM IDPSPTPSPS ATATAPALVL SNSGKRMDQA GKKKYVKQVT GRHNDTELHL AAQRGDLAAV QQILKDINSQ
101: MEGILSGEEF DAEVAEIRAS IVNEVNELGE TALFTAADKG HLDVVKELLK YSSRESIAKK NRSGYDPLHI AAIQGHHAIV EVLLDHDATL SQTFGPSNAT
201: PLVSAAMRGH TEVVNQLLSK AGNLLEISRS NNKNALHLAA RQGHVEVIKA LLSKDPQLAR RIDKKGQTAL HMAVKGQSSE VVKLLLDADP AIVMQPDKSC
301: NTALHVATRK KRAEIVELLL SLPDTNANTL TRDHKTALDI AEGLPLSEES SYIKECLARS GALRANELNQ PRDELRSTVT QIKNDVHIQL EQTKRTNKNV
401: HNISKELRKL HREGINNATN SVTVVAVLFA TVAFAAIFTV PGGDNNDGSA VVVGRASFKI FFIFNALALF TSLAVVVVQI TLVRGETKAE KRVVEVINKL
501: MWLASMCTSV AFLASSYIVV GRKNEWAAEL VTVVGGVIMA GVLGTMTYYV VKSKRTRSMR KKVKSARRSG SNSWHHSDFS NSEVDPIFAI

Arabidopsis Description

ITN1Ankyrin repeat-containing protein ITN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.