CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028679_P002	Maize	cytosol, nucleus, plasma membrane	94.62	94.08
Zm00001d047772_P002	Maize	plastid	93.6	92.53
Os03t0281000-01	Rice	nucleus, peroxisome, plasma membrane	88.52	89.3
HORVU4Hr1G058480.2	Barley	cytosol, nucleus, plasma membrane	86.19	85.32
TraesCS4B01G202400.2	Wheat	cytosol, nucleus, plasma membrane	85.61	84.87
TraesCS4D01G203300.1	Wheat	cytosol, nucleus, plasma membrane	86.48	84.16
TraesCS4A01G102200.2	Wheat	nucleus	85.47	81.44
GSMUA_Achr11P...	Banana	cytosol	57.85	81.06
GSMUA_Achr7P15350_001	Banana	cytosol, plastid	65.55	80.82
GSMUA_Achr5P07190_001	Banana	cytosol	61.19	80.04
GSMUA_Achr9P04170_001	Banana	cytosol	58.43	78.82
GSMUA_Achr6P33220_001	Banana	cytosol	61.34	77.15
CDY42145	Canola	cytosol	62.06	72.99
Bra034760.1-P	Field mustard	cytosol	61.92	72.82
PGSC0003DMT400060447	Potato	cytosol, nucleus, plasma membrane	61.63	72.6
Solyc05g054830.2.1	Tomato	nucleus	61.34	72.26
AT3G12360.1	Thale cress	cytosol	61.92	72.2
Bra038714.1-P	Field mustard	cytosol, plastid	60.47	72.1
CDY50551	Canola	cytosol	61.19	71.48
CDY50335	Canola	cytosol	61.19	71.48
VIT_13s0067g03880.t01	Wine grape	cytosol	60.61	70.8
KRG92972	Soybean	cytosol	60.17	70.77
VIT_08s0040g02750.t01	Wine grape	cytosol, peroxisome, plasma membrane	64.53	69.59
KRH36223	Soybean	cytosol	59.59	69.26
EES03848	Sorghum	cytosol	55.09	68.17
CDY07932	Canola	nucleus, plastid	58.28	66.94
Bra001304.1-P	Field mustard	nucleus	58.43	66.01
CDX73985	Canola	nucleus	58.43	66.01
Solyc10g084550.1.1	Tomato	plastid	55.96	65.81
AT3G09550.2	Thale cress	cytosol, nucleus, plasma membrane	58.28	65.31
CDY08436	Canola	cytosol	61.92	64.55
PGSC0003DMT400028722	Potato	cytosol, plastid	56.98	64.26
EES07299	Sorghum	cytosol, plasma membrane	31.69	41.21
EES15259	Sorghum	cytosol	33.28	40.75
EER95066	Sorghum	cytosol	33.58	40.74
EER97054	Sorghum	cytosol	32.7	40.04
OQU83151	Sorghum	cytosol	5.38	25.34
KXG36379	Sorghum	cytosol	12.79	22.06
EER90917	Sorghum	cytosol, peroxisome, plasma membrane	17.01	21.04
KXG28826	Sorghum	cytosol, peroxisome, plasma membrane	11.92	20.25
OQU89270	Sorghum	cytosol	15.99	19.57
KXG28091	Sorghum	cytosol, peroxisome, plasma membrane	16.86	19.53
EER90916	Sorghum	cytosol	15.99	19.47
OQU83144	Sorghum	cytosol	11.34	19.4
OQU80298	Sorghum	mitochondrion, plastid	19.04	18.85
OQU79686	Sorghum	cytosol, peroxisome, plasma membrane	14.83	18.55
KXG27928	Sorghum	plasma membrane	17.88	18.52
OQU83143	Sorghum	cytosol	9.16	18.05
OQU83029	Sorghum	cytosol, peroxisome, plasma membrane	17.3	17.6
EER89595	Sorghum	cytosol	9.59	17.46
KXG36384	Sorghum	cytosol	10.03	17.29
EER97319	Sorghum	plastid	16.42	17.12
KXG24315	Sorghum	cytosol, peroxisome, plasma membrane	15.26	17.02
OQU84849	Sorghum	plasma membrane	15.41	16.64
OQU84108	Sorghum	cytosol, nucleus, plasma membrane	18.17	16.43
KXG28374	Sorghum	cytosol, peroxisome, plasma membrane	15.55	16.36
EES18294	Sorghum	plasma membrane	15.26	15.02
EER88274	Sorghum	cytosol	16.42	14.91
KXG21092	Sorghum	cytosol, peroxisome, plasma membrane	13.52	14.83
OQU78058	Sorghum	plasma membrane	13.37	14.7
EER87702	Sorghum	nucleus	15.41	14.4
EER87700	Sorghum	cytosol	16.86	14.39
OQU83139	Sorghum	cytosol	4.22	12.95
KXG28093	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	17.01	12.53
EER96593	Sorghum	plasma membrane	8.72	12.4

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	EntrezGene:8081463	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
UniProt:C5WPA2	EnsemblPlants:EER95067	ProteinID:EER95067	ProteinID:EER95067.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036770	PFAM:PF12796	PFAM:PF13962	InterPro:PGG_dom	PFscan:PS50088	PFscan:PS50297
PANTHER:PTHR24177	PANTHER:PTHR24177:SF107	SMART:SM00248	EnsemblPlantsGene:SORBI_3001G414500	SUPFAM:SSF48403	unigene:Sbi.6279
TMHMM:TMhelix	UniParc:UPI0001A830BB	RefSeq:XP_002468069.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:69618751..69621912

Molecular Weight (calculated)

74040.3 Da

IEP (calculated)

10.483

GRAVY (calculated)

-0.132

Length

688 amino acids

Sequence
(BLAST)

001: MAADSGKGMA DLEIGPASPV SEGAPSPASS AGASGERPDQ SPSLLAKRPG LVMSFSGKRL DQSPGGSPSQ SRPVLVMSHS SNRLDQSPAR PVLVMSRSSN
101: RLDQSSPASS PARVRGPVLV MSGSSNRLES SSPSPSPTAA AAAAPVLVLS NSGKRMDQAG RKKYVKQVTG RHNDTELHLA AQRGDLEAVR QIIAEIDAQM
201: TGTGEEFDSE VAEIRAAIVN ESNEMEATAL LIAAEKGFLD IVVELLKHSD KDSLTRKNKS GFDPLHVAAR EGHRDIVKVL LDHDPSLGKT FGQSKVTPLI
301: TAAIRGHTAV VNLLLERVCG LVELSKANGK NALHFAARQG HVEVVKALLD ADTQLARRTD KKGQTALHMA VKGTNPLVVQ ALVNADPAIV MLPDRNGNLA
401: LHVATRKKRS EIVNVLLLLP DMNVNALTRD RKTAFDIAEG LPLSEESQEI KECLARAGAV RANDLNQPRD ELRKTVTEIK KDVHTQLEQA RKTNKNVYGI
501: AKELRKLHRE GINNATNSVT VVAVLFATVA FAAIFTVPGG NTNDGVAVAV HATAFKVFFI FNAIALFTSL AVVVVQITLV RGETKAERRV IEIINKLMWL
601: ASVCTTVAFI SSSYIVVGRR LKWAALLVTL IGGVIMAGVL GTMTYYVVKS KRTRKIRRKV KSTRRSGSNS WQHNSEFSDS EIDRIYAI

Best Arabidopsis Sequence Match ( AT3G12360.2 )
(BLAST)

001: MEKGGMILLQ SSENQNPMID PSPTPSPSAT ATAPALVLSN SGKRMDQAGK KKYVKQVTGR HNDTELHLAA QRGDLAAVQQ ILKDINSQME GILSGEEFDA
101: EVAEIRASIV NEVNELGETA LFTAADKGHL DVVKELLKYS SRESIAKKNR SGYDPLHIAA IQGHHAIVEV LLDHDATLSQ TFGPSNATPL VSAAMRGHTE
201: VVNQLLSKAG NLLEISRSNN KNALHLAARQ GHVEVIKALL SKDPQLARRI DKKGQTALHM AVKGQSSEVV KLLLDADPAI VMQPDKSCNT ALHVATRKKR
301: AEIVELLLSL PDTNANTLTR DHKTALDIAE GLPLSEESSY IKECLARSGA LRANELNQPR DELRSTVTQI KNDVHIQLEQ TKRTNKNVHN ISKELRKLHR
401: EGINNATNSV TVVAVLFATV AFAAIFTVPG GDNNDGSAVV VGRASFKIFF IFNALALFTS LAVVVVQITL VRGETKAEKR VVEVINKLMW LASMCTSVAF
501: LASSYIVVGR KNEWAAELVT VVGGVIMAGV LGTMTYYVVK SKRTRSMRKK VKSARRSGSN SWHHSDFSNS EVDPIFAI

Arabidopsis Description

ITN1Ankyrin repeat-containing protein ITN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.