CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042948_P001	Maize	cytosol	97.66	97.49
Os01t0837000-01	Rice	cytosol	91.01	91.01
TraesCS3B01G387800.2	Wheat	cytosol	89.03	89.35
TraesCS3A01G354800.1	Wheat	cytosol	89.03	89.19
TraesCS3D01G348800.2	Wheat	cytosol	88.85	89.01
HORVU3Hr1G087050.1	Barley	cytosol	88.31	88.79
GSMUA_Achr6P34410_001	Banana	cytosol	66.73	72.75
PGSC0003DMT400060447	Potato	cytosol, nucleus, plasma membrane	66.19	63.01
KRG92972	Soybean	cytosol	66.01	62.73
Solyc05g054830.2.1	Tomato	nucleus	65.83	62.67
KRH36223	Soybean	cytosol	66.01	61.99
Bra038714.1-P	Field mustard	cytosol, plastid	64.03	61.7
VIT_13s0067g03880.t01	Wine grape	cytosol	65.11	61.46
Bra034760.1-P	Field mustard	cytosol	64.57	61.37
CDY42145	Canola	cytosol	64.57	61.37
AT3G12360.1	Thale cress	cytosol	64.75	61.02
CDY50335	Canola	cytosol	64.39	60.78
CDY07932	Canola	nucleus, plastid	65.47	60.77
CDY50551	Canola	cytosol	64.21	60.61
VIT_08s0040g02750.t01	Wine grape	cytosol, peroxisome, plasma membrane	68.88	60.03
Bra001304.1-P	Field mustard	nucleus	65.47	59.77
CDX73985	Canola	nucleus	65.47	59.77
AT3G09550.2	Thale cress	cytosol, nucleus, plasma membrane	65.65	59.45
Solyc10g084550.1.1	Tomato	plastid	60.43	57.44
PGSC0003DMT400028722	Potato	cytosol, plastid	62.05	56.56
EER95067	Sorghum	cytosol, nucleus, plasma membrane	68.17	55.09
CDY08436	Canola	cytosol	64.57	54.39
EES07299	Sorghum	cytosol, plasma membrane	40.29	42.34
EER95066	Sorghum	cytosol	42.09	41.27
EES15259	Sorghum	cytosol	40.65	40.21
EER97054	Sorghum	cytosol	39.57	39.15
GSMUA_Achr9P03090_001	Banana	cytosol	50.72	33.69
OQU83151	Sorghum	cytosol	7.37	28.08
KXG36379	Sorghum	cytosol	16.37	22.81
KXG28091	Sorghum	cytosol, peroxisome, plasma membrane	21.22	19.87
EER90916	Sorghum	cytosol	20.14	19.82
EER90917	Sorghum	cytosol, peroxisome, plasma membrane	19.78	19.78
KXG28826	Sorghum	cytosol, peroxisome, plasma membrane	14.39	19.75
OQU79686	Sorghum	cytosol, peroxisome, plasma membrane	19.06	19.27
OQU83144	Sorghum	cytosol	13.67	18.91
KXG27928	Sorghum	plasma membrane	22.3	18.67
OQU89270	Sorghum	cytosol	18.53	18.33
OQU83143	Sorghum	cytosol	11.33	18.05
OQU83029	Sorghum	cytosol, peroxisome, plasma membrane	21.04	17.31
EER97319	Sorghum	plastid	20.5	17.27
OQU84849	Sorghum	plasma membrane	19.6	17.11
KXG36384	Sorghum	cytosol	12.23	17.04
KXG24315	Sorghum	cytosol, peroxisome, plasma membrane	18.88	17.02
OQU80298	Sorghum	mitochondrion, plastid	21.22	16.98
EER89595	Sorghum	cytosol	11.15	16.4
KXG28374	Sorghum	cytosol, peroxisome, plasma membrane	18.53	15.75
OQU84108	Sorghum	cytosol, nucleus, plasma membrane	20.86	15.24
EER88274	Sorghum	cytosol	20.5	15.04
EES18294	Sorghum	plasma membrane	18.88	15.02
OQU78058	Sorghum	plasma membrane	16.55	14.7
KXG21092	Sorghum	cytosol, peroxisome, plasma membrane	16.55	14.67
EER87700	Sorghum	cytosol	20.86	14.39
EER87702	Sorghum	nucleus	18.88	14.27
OQU83139	Sorghum	cytosol	5.04	12.5
KXG28093	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	20.5	12.21
EER96593	Sorghum	plasma membrane	10.43	11.98

Protein Annotations

Gene3D:1.25.40.20	Gene3D:1.25.40.960	MapMan:35.1	EntrezGene:8057765	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	UniProt:C5XP29	EnsemblPlants:EES03848	ProteinID:EES03848	ProteinID:EES03848.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	PFAM:PF12796	PFAM:PF13962	InterPro:PGG_dom	PFscan:PS50088
PFscan:PS50297	PANTHER:PTHR24177	PANTHER:PTHR24177:SF68	SMART:SM00248	EnsemblPlantsGene:SORBI_3003G348400	SUPFAM:SSF48403
TMHMM:TMhelix	UniParc:UPI0001A85881	RefSeq:XP_002458728.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:66881410..66885198

Molecular Weight (calculated)

60508.0 Da

IEP (calculated)

9.705

GRAVY (calculated)

-0.120

Length

556 amino acids

Sequence
(BLAST)

001: MSLEIHEEDG GASGARPAKV MSVSGSGKRG RYVRQVTGRH NDTDIHVAAR GGDAVALRRA LSVAAAAVAA TGEGPEDLEA ARRAVAAEPN EAGETPLVAA
101: AERGHLEVVV ELLRHLDAEG LAAKNRSGYD ALHVAAREGR HAVVQEMLHH DRMLAKTFGP ANTTPLISAA MRGHIEVVEL LLEQDDFGLV EMARDNGKNA
201: LHFAARQGHI GIVKALLEKD PQLARRNDKK GQTALHMAVK GTSCDVLRAL VDADPAIVML PDKNGNTALH VATRKKRAEI VSVLLRLPDT HVNALNRDHK
301: TAFDIAEGLP VCEESCEIKD ILSQHGALRS RELNQPRDEL RKTVTEIKKD VHTQLEQTRK TNKNVHGIAK ELRKLHREGI NNATNSVTVV AVLFATVAFA
401: AIFTVPGGND NNGLAVVVQA TSFKIFFIFN AVALFTSLAV VVVQITVVRG ETKSERRVVE VINKLMWIAS VCTTISFIAS CYIVLGRHFQ WAAILVSLIG
501: GVTMAGVLGT MTYYVVKSKR QRKIRKKEKM SRRSGSSSWY DHTELSDTEL NPVYAL

Best Arabidopsis Sequence Match ( AT3G12360.1 )
(BLAST)

001: MAASSYVDGE RDMEKGGMIL LQSSENQNPM IDPSPTPSPS ATATAPALVL SNSGKRMDQA GKKKYVKQVT GRHNDTELHL AAQRGDLAAV QQILKDINSQ
101: MEGILSGEEF DAEVAEIRAS IVNEVNELGE TALFTAADKG HLDVVKELLK YSSRESIAKK NRSGYDPLHI AAIQGHHAIV EVLLDHDATL SQTFGPSNAT
201: PLVSAAMRGH TEVVNQLLSK AGNLLEISRS NNKNALHLAA RQGHVEVIKA LLSKDPQLAR RIDKKGQTAL HMAVKGQSSE VVKLLLDADP AIVMQPDKSC
301: NTALHVATRK KRAEIVELLL SLPDTNANTL TRDHKTALDI AEGLPLSEES SYIKECLARS GALRANELNQ PRDELRSTVT QIKNDVHIQL EQTKRTNKNV
401: HNISKELRKL HREGINNATN SVTVVAVLFA TVAFAAIFTV PGGDNNDGSA VVVGRASFKI FFIFNALALF TSLAVVVVQI TLVRGETKAE KRVVEVINKL
501: MWLASMCTSV AFLASSYIVV GRKNEWAAEL VTVVGGVIMA GVLGTMTYYV VKSKRTRSMR KKVKSARRSG SNSWHHSDFS NSEVDPIFAI

Arabidopsis Description

ITN1Ankyrin repeat-containing protein ITN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.