Factsheet for GSMUA_Achr6P33220_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	77.7	86.56
GSMUA_Achr9P04170_001	Banana	cytosol	78.43	84.12
GSMUA_Achr5P07190_001	Banana	cytosol	78.79	81.94
GSMUA_Achr7P15350_001	Banana	cytosol, plastid	79.52	77.96
GSMUA_Achr6P34410_001	Banana	cytosol	69.84	74.9
Bra038714.1-P	Field mustard	cytosol, plastid	72.39	68.63
Bra034760.1-P	Field mustard	cytosol	72.94	68.21
CDY42145	Canola	cytosol	72.94	68.21
AT3G12360.1	Thale cress	cytosol	73.31	67.97
CDY50551	Canola	cytosol	73.13	67.91
CDY50335	Canola	cytosol	73.13	67.91
KRG92972	Soybean	cytosol	72.58	67.86
PGSC0003DMT400060447	Potato	cytosol, nucleus, plasma membrane	72.03	67.47
Solyc05g054830.2.1	Tomato	nucleus	71.66	67.12
VIT_13s0067g03880.t01	Wine grape	cytosol	72.21	67.06
KRH36223	Soybean	cytosol	71.48	66.05
CDY07932	Canola	nucleus, plastid	70.57	64.44
VIT_08s0040g02750.t01	Wine grape	cytosol, peroxisome, plasma membrane	74.41	63.79
CDX73985	Canola	nucleus	70.57	63.38
Bra001304.1-P	Field mustard	nucleus	70.57	63.38
Os03t0281000-01	Rice	nucleus, peroxisome, plasma membrane	78.61	63.05
AT3G09550.2	Thale cress	cytosol, nucleus, plasma membrane	70.75	63.03
Zm00001d028679_P002	Maize	cytosol, nucleus, plasma membrane	77.7	61.42
EER95067	Sorghum	cytosol, nucleus, plasma membrane	77.15	61.34
TraesCS4B01G202400.2	Wheat	cytosol, nucleus, plasma membrane	77.7	61.24
Zm00001d047772_P002	Maize	plastid	77.88	61.21
Solyc10g084550.1.1	Tomato	plastid	65.45	61.2
HORVU4Hr1G058480.2	Barley	cytosol, nucleus, plasma membrane	77.51	61.01
CDY08436	Canola	cytosol	72.94	60.45
TraesCS4D01G203300.1	Wheat	cytosol, nucleus, plasma membrane	77.88	60.25
PGSC0003DMT400028722	Potato	cytosol, plastid	66.0	59.18
TraesCS4A01G102200.2	Wheat	nucleus	77.33	58.59
GSMUA_Achr7P23720_001	Banana	cytosol, peroxisome, plasma membrane	19.93	46.58
GSMUA_Achr8P02120_001	Banana	cytosol	45.34	46.1
GSMUA_Achr5P05930_001	Banana	cytosol, plasma membrane	40.95	43.16
GSMUA_Achr6P33230_001	Banana	cytosol	45.52	41.99
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, peroxisome, plasma membrane	42.41	40.21
GSMUA_Achr7P23730_001	Banana	cytosol	21.39	36.91
GSMUA_Achr9P04150_001	Banana	plasma membrane	44.24	36.78
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, plasma membrane, plastid	43.51	36.62
GSMUA_Achr9P03090_001	Banana	cytosol	53.75	35.13
GSMUA_Achr9P02740_001	Banana	cytosol	21.75	20.27
GSMUA_Achr9P02700_001	Banana	cytosol	13.16	18.7
GSMUA_Achr9P02720_001	Banana	cytosol	13.16	18.51
GSMUA_Achr7P12630_001	Banana	cytosol	21.39	17.97
GSMUA_Achr9P02690_001	Banana	plasma membrane	18.83	17.88

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr6G33220_001
EnsemblPlants:GSMUA_Achr6P33220_001	EnsemblPlants:GSMUA_Achr6T33220_001	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M0TCB5
PFAM:PF12796	PFAM:PF13962	InterPro:PGG_dom	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24177
PANTHER:PTHR24177:SF107	SMART:SM00248	SUPFAM:SSF48403	TMHMM:TMhelix	UniParc:UPI000296AEE7	SEG:seg

Description

Ankyrin repeat-containing protein At3g12360 [Source:GMGC_GENE;Acc:GSMUA_Achr6G33220_001]

Coordinates

chr6:-:32350727..32354816

Molecular Weight (calculated)

59907.4 Da

IEP (calculated)

10.360

GRAVY (calculated)

-0.111

Length

547 amino acids

Sequence
(BLAST)

001: MVLSHSGRRL DQEVAASSSS APATPALVLS NSGKRMDQAA SPSLVLSNSG KRMDPSGKKK YVKQVTGRHN DTELHLAAHR GDLAADETAL FTAAQKGFLD
101: VVVELLKYTD RESLTRKNRS GFDVFHIAAR EGHQAIVQVL LGHDPTLVKT FGQSNATPLI TAATRGHTEV VNLLLEQDDS LIELSKKNGK NALHFAARQG
201: HVEIVKALLG KDPQLARRTD KKGQTALHMA VKGTSCEVVK ALLNTDPAIV MLPDRAANTA LHVATRKKRA EIVHLLVLLP DINVNALTRD HKTAFDIAEG
301: LPLSEESSDI KDSLSRCGAC RANELNQPRD ELRRTVTEIK KDVHIQLEQT RKTNKNVNGI AKELRKLHRE GINNATNSVT VVAVLFATVA FAAIFTVPGG
401: TGDDGVAEVV HKGSFKIFFI FNAIALFTSL AVVVVQITLV RGETKAERRV VEIINKLMWL ASICTTVAFI ASSYIVVGRH FQWAAILVTL IGGLIMAGVL
501: GTMTFYVVKS KRTRSIRRRE KSMRSTSNSW HHNHEFSDSE VDRIYAI

Best Arabidopsis Sequence Match ( AT3G12360.1 )
(BLAST)

001: MAASSYVDGE RDMEKGGMIL LQSSENQNPM IDPSPTPSPS ATATAPALVL SNSGKRMDQA GKKKYVKQVT GRHNDTELHL AAQRGDLAAV QQILKDINSQ
101: MEGILSGEEF DAEVAEIRAS IVNEVNELGE TALFTAADKG HLDVVKELLK YSSRESIAKK NRSGYDPLHI AAIQGHHAIV EVLLDHDATL SQTFGPSNAT
201: PLVSAAMRGH TEVVNQLLSK AGNLLEISRS NNKNALHLAA RQGHVEVIKA LLSKDPQLAR RIDKKGQTAL HMAVKGQSSE VVKLLLDADP AIVMQPDKSC
301: NTALHVATRK KRAEIVELLL SLPDTNANTL TRDHKTALDI AEGLPLSEES SYIKECLARS GALRANELNQ PRDELRSTVT QIKNDVHIQL EQTKRTNKNV
401: HNISKELRKL HREGINNATN SVTVVAVLFA TVAFAAIFTV PGGDNNDGSA VVVGRASFKI FFIFNALALF TSLAVVVVQI TLVRGETKAE KRVVEVINKL
501: MWLASMCTSV AFLASSYIVV GRKNEWAAEL VTVVGGVIMA GVLGTMTYYV VKSKRTRSMR KKVKSARRSG SNSWHHSDFS NSEVDPIFAI

Arabidopsis Description

ITN1Ankyrin repeat-containing protein ITN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7A2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.