Factsheet for PGSC0003DMT400068453

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
extracellular 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g008810.2.1	Tomato	extracellular	94.78	91.09
VIT_10s0003g00600.t01	Wine grape	extracellular, vacuole	61.16	57.65
KRH20355	Soybean	extracellular, plasma membrane	55.94	52.3
KRH10964	Soybean	endoplasmic reticulum, plasma membrane	55.07	51.91
KRH21336	Soybean	extracellular	55.07	51.91
PGSC0003DMT400058744	Potato	plasma membrane	54.49	51.65
KRH50140	Soybean	extracellular, golgi, plasma membrane	55.07	51.63
AT5G45960.1	Thale cress	endoplasmic reticulum, golgi, vacuole	53.04	48.8
CDX87748	Canola	endoplasmic reticulum, golgi, vacuole	52.46	47.88
Bra022003.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	52.46	47.76
CDY50488	Canola	endoplasmic reticulum, golgi, vacuole	43.19	44.08
PGSC0003DMT400086168	Potato	extracellular	39.13	42.59
PGSC0003DMT400025568	Potato	extracellular	42.9	42.29
PGSC0003DMT400025569	Potato	extracellular	43.19	42.21
PGSC0003DMT400001828	Potato	extracellular	41.16	40.23
PGSC0003DMT400075642	Potato	extracellular	40.58	38.89
PGSC0003DMT400001826	Potato	endoplasmic reticulum, extracellular, vacuole	38.84	37.64
PGSC0003DMT400038810	Potato	extracellular	38.26	37.29
PGSC0003DMT400070969	Potato	extracellular	22.9	36.92
PGSC0003DMT400038808	Potato	golgi, plasma membrane	37.39	36.24
PGSC0003DMT400027838	Potato	extracellular	35.36	34.08
PGSC0003DMT400025571	Potato	cytosol, plasma membrane, plastid	34.78	17.05
PGSC0003DMT400091356	Potato	cytosol, nucleus, plasma membrane	37.39	16.37

Protein Annotations

EnsemblPlants:PGSC0003DMT400068453	EnsemblPlantsGene:PGSC0003DMG400026619	Gene3D:3.40.50.1110	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787
GO:GO:0016788	InterPro:GDSL	InterPro:IPR036514	InterPro:SGNH_hydro_sf	InterPro:SGNH_plant_lipase_like	ncoils:Coil
PANTHER:PTHR22835	PANTHER:PTHR22835:SF261	PFAM:PF00657	PGSC:PGSC0003DMG400026619	SUPFAM:SSF52266	UniParc:UPI00029682A6
UniProt:M1CJ24	MapMan:35.1	:	:	:	:

Description

GDSL esterase/lipase [Source:PGSC_GENE;Acc:PGSC0003DMG400026619]

Coordinates

chr10:-:4459562..4463668

Molecular Weight (calculated)

38732.4 Da

IEP (calculated)

7.795

GRAVY (calculated)

-0.148

Length

345 amino acids

Sequence
(BLAST)

001: MLEAPILIQA QSKKNSLVSA IFIFGDSTAD PGNNNYISTP FKSNFSPYGK DFLNHVPTGR FTNGMLANDF IARYVGVKEY VPPYLDQSLS IEELKTGVSF
101: ASAGTGFDPL TPKISTVISL SKQIEYFKEY QEKMEAAIGK EQTQNLIKES LFIISAGTND FVVNYNTLPI RSKSYTLSTY TDFLLQHVQF FLQKLVDQGA
201: RRIGMVGLPP MGCLPIVITL HSDNAFSKRN CIEFYSSIAR DYNSKLQNKL NDMQIKFANL GSRFAYLDIY GPLMDMIVGH KYDFEKANYG CCGTGLLEGA
301: FLCNPSSYVC KNASKYVFWD SIHPTEKTYY LISQTFQPTI DSITK

Best Arabidopsis Sequence Match ( AT5G45960.1 )
(BLAST)

001: MRSHHRHFSS YVSFILFLFL FFISFSSSTS KLEPAKSEPK RKHSVSAILV FGDSTVDPGN NNYIDTVFKC NFPPYGLDFR NKTPTGRFCN GRLVTDFIAS
101: YIGVKENVPP YLDPNLGINE LISGVSFASA GSGYDPLTPT ITNVIDIPTQ LEYFREYKRK LEGKMGKQEM EKHIEEAMFC VSAGTNDFVI NYFTIPIRRK
201: TFTIEAYQQF VISNLKQFIQ GLWKEGARKI TVAGLPPIGC LPIVITLFSG EALTNRRCID RFSTVATNYN FLLQKQLALM QVGLAHLGSK IFYLDVYNPV
301: YEVIRDPRKF GFEEVFSGCC GSGYLEASFL CNPKSYVCPN TSAYVFFDSI HPSEKTYFSL FRSLRPIYDS ILGSF

Arabidopsis Description

GDSL esterase/lipase At5g45960 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ40]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.