Factsheet for PGSC0003DMT400091356

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

plastid 2
plasma membrane 3
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g007440.1.1	Tomato	extracellular, golgi, vacuole	36.04	78.67
VIT_06s0004g07450.t01	Wine grape	extracellular	22.08	47.93
KRH72763	Soybean	extracellular	21.7	46.98
CDY19082	Canola	endoplasmic reticulum, extracellular, vacuole	18.53	46.65
PGSC0003DMT400086168	Potato	extracellular	18.15	45.11
Bra031550.1-P	Field mustard	cytosol, nucleus, peroxisome	18.27	44.04
AT2G24560.1	Thale cress	extracellular, vacuole	20.05	43.53
AT1G58430.1	Thale cress	vacuole	19.8	43.33
KRH72761	Soybean	extracellular	19.42	42.98
AT2G30220.1	Thale cress	extracellular	19.42	42.74
Bra015541.1-P	Field mustard	extracellular	19.54	42.66
Bra021626.1-P	Field mustard	endoplasmic reticulum, extracellular	19.42	42.62
Bra022848.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	17.77	42.42
CDY10238	Canola	extracellular	19.42	42.38
CDY29681	Canola	endoplasmic reticulum, extracellular, vacuole	19.29	42.34
AT2G30310.1	Thale cress	vacuole	19.29	42.34
CDY23934	Canola	plastid	17.26	41.59
AT2G31540.1	Thale cress	endoplasmic reticulum, extracellular	18.91	41.39
CDX84777	Canola	extracellular, plasma membrane	15.23	41.24
CDY34491	Canola	endoplasmic reticulum, extracellular, vacuole	18.78	41.11
GSMUA_Achr5P14310_001	Banana	extracellular, plasma membrane, vacuole	18.78	41.0
CDY54004	Canola	endoplasmic reticulum, plasma membrane, vacuole	17.89	40.75
Os01t0827700-00	Rice	plasma membrane	18.02	40.57
CDY09942	Canola	extracellular, plasma membrane	18.27	40.56
CDY10239	Canola	endoplasmic reticulum, extracellular	18.27	40.22
Bra015542.1-P	Field mustard	endoplasmic reticulum, extracellular	18.27	40.22
CDY06666	Canola	endoplasmic reticulum, extracellular	18.15	39.94
CDY59061	Canola	plasma membrane	18.15	39.61
AT1G06990.1	Thale cress	extracellular, plasma membrane, vacuole	18.02	39.44
EES03823	Sorghum	plasma membrane	17.13	38.68
TraesCS3B01G380200.1	Wheat	plasma membrane	17.13	38.46
Zm00001d012476_P001	Maize	plasma membrane	16.88	37.78
Bra018234.1-P	Field mustard	endoplasmic reticulum, vacuole	20.81	37.7
CDY10810	Canola	endoplasmic reticulum, vacuole	20.69	37.47
PGSC0003DMT400068453	Potato	cytosol	16.37	37.39
Bra021725.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	20.18	36.89
PGSC0003DMT400070969	Potato	extracellular	9.77	35.98
PGSC0003DMT400058744	Potato	plasma membrane	16.24	35.16
PGSC0003DMT400025568	Potato	extracellular	15.61	35.14
HORVU3Hr1G088120.3	Barley	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	16.62	34.66
PGSC0003DMT400075642	Potato	extracellular	15.74	34.44
TraesCS3D01G341900.1	Wheat	mitochondrion, plasma membrane	17.13	33.75
PGSC0003DMT400025569	Potato	extracellular	15.1	33.71
PGSC0003DMT400038808	Potato	golgi, plasma membrane	14.85	32.87
TraesCS3A01G348300.1	Wheat	mitochondrion	17.26	32.54
PGSC0003DMT400038810	Potato	extracellular	14.59	32.49
PGSC0003DMT400001828	Potato	extracellular	14.34	32.01
PGSC0003DMT400001826	Potato	endoplasmic reticulum, extracellular, vacuole	14.09	31.18
PGSC0003DMT400027838	Potato	extracellular	13.58	29.89
PGSC0003DMT400025571	Potato	cytosol, plasma membrane, plastid	15.99	17.9

Protein Annotations

Gene3D:3.40.50.1110	Gene3D:3.80.10.10	MapMan:35.1	InterPro:GDSL	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016788	InterPro:IPR001611	InterPro:IPR032675	InterPro:IPR036514	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M1DME7	PFAM:PF00657	PFAM:PF08263	PFAM:PF13855
EnsemblPlantsGene:PGSC0003DMG400040927	PGSC:PGSC0003DMG400040927	EnsemblPlants:PGSC0003DMT400091356	PRINTS:PR00019	PFscan:PS51450	PANTHER:PTHR22835
PANTHER:PTHR22835:SF152	InterPro:SGNH_hydro_sf	InterPro:SGNH_plant_lipase_like	SMART:SM00369	SUPFAM:SSF52058	TMHMM:TMhelix
UniParc:UPI00029486A8	SEG:seg	:	:	:	:

Description

Cf-2.2 [Source:PGSC_GENE;Acc:PGSC0003DMG400040927]

Coordinates

chr4:+:1800177..1808982

Molecular Weight (calculated)

88563.4 Da

IEP (calculated)

7.404

GRAVY (calculated)

-0.123

Length

788 amino acids

Sequence
(BLAST)

001: MPKFTSILVF GDSTVDTGNN NYIFTLFKGN HIPYGKDYFN HVSTGRFSNG KIVPDILANL LKLKKYGVPP YLNPNLLEND YRSGVSFGSA GSGYDDLTSL
101: ISGVISMRKQ LEHFKEYLKK LKDFFGEKEK KRIVKGALVM VSSGSNDFIF NFYDVPTRRL EFSLEEYQDF LLDKVQCFVK ELYELGCRNI IVSGLPPIGC
201: LPIQMTTKSP LHRTCIEKEN SDSQSYNKKL EELLPHLQAQ LQGSKILYSD IYTPLSHLVN NPHQYDMTTS HCTFIYILLL LFSLPFKVIT SSAKTEAEAL
301: IKWKSTNLSS TSLLDSWSIS NLENLCNWTF IACNADGTIS EINLSNATLS GSLDHLDFTS FPNLTSFILN GNNFSGSIPS NIGNASSLEV VVLLNNSFQG
401: KIPSSIGKLR NLQTLDLRKN RLNSTIPSEL GLCTNLIILA LAENALQGTL PISLSSLIKL SQLALSDNFL SGDNHFNDTF LVWLGNLSEL KVLSLRSNKF
501: HGLIRTSRIE NMFPELRIID LSYNAFSGNL PTSMFQHLKA MMRVDQTMKA PIYLGVYSYC HDSMTVATKG RELELVRILT TYTTIDLSSN RFVGNIPSIM
601: GELIALRVLN LSHNQLQDHI PPSLGNLYVL ESLDLSFNHL SGEIPQQLAS LTSLEFLNLS YNYLQVCIPQ GPQFSTFQNN SYEGNVGLHG FPISDGCGND
701: RVSETNYTVS SLEDQESNSE FPNDFWKAAL MGYGSGLCIG MSIIYFMIST GNPRWLARII EKLEHKFIMQ MRKKQQGQRN YRIRNNRF

Best Arabidopsis Sequence Match ( AT2G24560.2 )
(BLAST)

001: MSTSKTITFT LFIAALLSSC DAATNATSQP LFPAILIFGD STVDTGNNNY HSQTIFKAKH LPYGIDLPNH KASGRFTNGK IFSDIIATKL NIKQFVPPFL
101: QPNLSDQEIV TGVCFASAGA GYDDHTSLST QAIRVLDQQK MFKNYIARLK SIVGDKKAME IIKNALVVIS AGPNDFILNY YDIPSRRLEF PHISGYQDFV
201: LQRLDNFVRE LYSLGCRKIM VGGLPPMGCL PIQMTAKFRN ALRFCLEQEN RDSVLYNQKL QNLLPQIEAS LTGSKILYSN VYDPMMDMMQ NPSKYGIDDT
301: ISFLFGKVSY EINIDQ

Arabidopsis Description

GDSL esterase/lipase At2g24560 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.