Factsheet for PGSC0003DMT400072250

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g081260.1.1	Tomato	plasma membrane	96.91	96.91
VIT_08s0056g01070.t01	Wine grape	plasma membrane	64.54	64.54
VIT_08s0056g01120.t01	Wine grape	plasma membrane	63.51	63.51
VIT_08s0056g01040.t01	Wine grape	golgi, peroxisome, plasma membrane	48.66	61.14
VIT_08s0056g01000.t01	Wine grape	plasma membrane, vacuole	49.9	58.17
VIT_08s0056g01080.t01	Wine grape	plasma membrane	60.41	57.12
CDY38453	Canola	plasma membrane	45.36	55.28
Bra023633.1-P	Field mustard	plasma membrane	53.2	53.86
AT3G03620.2	Thale cress	plasma membrane	55.05	53.4
AT5G17700.2	Thale cress	plasma membrane	54.02	52.72
CDY51758	Canola	plasma membrane	54.23	52.71
Bra013957.1-P	Field mustard	plasma membrane	53.81	52.52
CDY50654	Canola	plasma membrane	54.02	52.51
Bra031982.1-P	Field mustard	plasma membrane	54.02	52.51
Bra036449.1-P	Field mustard	plasma membrane	53.4	52.01
CDY29945	Canola	plasma membrane	53.4	52.01
PGSC0003DMT400031221	Potato	cytosol, plasma membrane, vacuole	51.96	51.85
PGSC0003DMT400060876	Potato	cytosol, peroxisome, plasma membrane	52.16	51.84
CDY21177	Canola	plasma membrane	52.99	51.61
CDY16896	Canola	plasma membrane	49.48	48.39
PGSC0003DMT400011415	Potato	plasma membrane	47.84	46.03
PGSC0003DMT400005437	Potato	cytosol, peroxisome, plasma membrane	45.98	44.69
PGSC0003DMT400041642	Potato	cytosol, plasma membrane, vacuole	42.47	41.78
PGSC0003DMT400005432	Potato	plasma membrane	40.62	41.56
PGSC0003DMT400021339	Potato	peroxisome, plasma membrane, vacuole	39.38	39.96
PGSC0003DMT400065544	Potato	cytosol, peroxisome, plasma membrane	38.76	38.84
PGSC0003DMT400064838	Potato	plasma membrane	37.94	38.66
PGSC0003DMT400032971	Potato	cytosol, peroxisome, plasma membrane	38.76	37.6
PGSC0003DMT400052553	Potato	golgi, plasma membrane, vacuole	38.76	37.52
PGSC0003DMT400026353	Potato	plasma membrane	38.76	37.38
PGSC0003DMT400042438	Potato	cytosol, peroxisome, plasma membrane	38.97	37.13
PGSC0003DMT400047906	Potato	cytosol, peroxisome, plasma membrane	39.18	36.97
PGSC0003DMT400026355	Potato	plasma membrane	37.53	36.11
PGSC0003DMT400076953	Potato	plasma membrane	37.53	35.97
PGSC0003DMT400022543	Potato	plasma membrane	37.32	34.54
PGSC0003DMT400042439	Potato	cytosol, plasma membrane, vacuole	37.53	34.47
PGSC0003DMT400074161	Potato	plasma membrane	31.55	32.01

Protein Annotations

EntrezGene:102604329	MapMan:24.2.4.1.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006855	GO:GO:0008150	GO:GO:0015238	GO:GO:0015297	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	UniProt:M1CPY0	InterPro:MATE_fam	PFAM:PF01554	EnsemblPlantsGene:PGSC0003DMG400028117	PGSC:PGSC0003DMG400028117
EnsemblPlants:PGSC0003DMT400072250	PANTHER:PTHR11206	PANTHER:PTHR11206:SF154	TIGRFAMs:TIGR00797	TMHMM:TMhelix	UniParc:UPI00029662E0
RefSeq:XP_006339223.1	RefSeq:XP_006339224.1	:	:	:	:

Description

MATE family transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400028117]

Coordinates

chr10:-:56682621..56689122

Molecular Weight (calculated)

53363.9 Da

IEP (calculated)

6.497

GRAVY (calculated)

0.677

Length

485 amino acids

Sequence
(BLAST)

001: MDNSVQERLL DSQIEKVDEN LKERIYDETK KIWRVALPGI LSRVASFGSI VVTQSFIGHI SELDLAAYAL VQTLTVRFVN GILIGMSSAT ETLCGQSYGA
101: GQYHMMGIYL QRSWIVGLIT LTVLLPFFVL ATPIFKLLGE NGSIADAAGY VSYWFIPFIY NFVFSLTIQM YLQAQQKNMI IAWLSVIQFV IHIPLSWLLV
201: IQLNYGVPGA MIALSISSWF VVVGEFVYIL GGWCPNTWNG FSLAALKDVL PVMKLSISSG VMVCLELWYN AVLVLLAGYM KNAEVAISAF SICLNINGWE
301: FMISLGFLGA ACVRIANELG KGDAKAVKFS IKVLVSTSLI IGLFFWAVCL IFGRNLGYLF SDEKAVTDSV ADLSTLLAFS ILLNSIYPVL SGVAVGAGLQ
401: STVAIINLCC FYLIGVPIGA LLGYVAHLQV KGIWIGMICG IVTQSAALCY MTWKTDWDGE VSKAKQRLNR WYLKSSEESN QNDQA

Best Arabidopsis Sequence Match ( AT3G03620.2 )
(BLAST)

001: MSTQEEMEER LLREGSDAEG QSNNRESIYL RTKVWSEVNK MWRIALPSSL FRMTSFGSII VAQAFIGHSS ELGLAAYALL QSTFIRFLYG LMGGMSSATE
101: TLCGQAYGAE QYHTMGIYLQ RSWIVDMAVT TLFLPFIVLA GPILRLLGQN VEITKTVDEI YPWMIPYVYS LIFTMTIQMY LQAQMRNAIV GVLSTLSLAL
201: DLVVTWWCVS VMGMGIGGAL LGLNVGSWAM VLAEFVYIFG GWCPFTWTGF SIAAFVDLIP MLKLSISSGF MICLEYWYMS ILVLMAGYTK DAKIAISAFS
301: ICQYIYTWEL NICLGFLGAA CVRVANELGK GDAHAVRFSI KVILTISTLM GVIFSALCLA FCGRISYLFS NSDEVSDAVN DLSVILAVSI LLNSIQPILS
401: GVAVGAGMQS IVAVVNLASY YAIGIPLGLI LTYVFHLGVK GLWSGMLAGI AIQTIILCYI IYKTDWELEV KRTCERMKVW SLKPSNEESN PIIREESRSK

Arabidopsis Description

DTX24Protein DETOXIFICATION 24 [Source:UniProtKB/Swiss-Prot;Acc:F4J158]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.