Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g007180.1.1 | Tomato | nucleus | 98.01 | 98.01 |
| VIT_16s0022g01740.t01 | Wine grape | nucleus | 70.46 | 69.82 |
| KRG92459 | Soybean | cytosol, nucleus | 56.82 | 61.82 |
| KRH34341 | Soybean | cytosol, nucleus | 58.28 | 61.62 |
| KRH38730 | Soybean | cytosol | 62.25 | 61.6 |
| KRH09233 | Soybean | nucleus | 58.28 | 59.06 |
| PGSC0003DMT400010029 | Potato | nucleus | 64.24 | 58.79 |
| GSMUA_Achr2P03190_001 | Banana | nucleus | 42.12 | 58.56 |
| GSMUA_Achr2P12300_001 | Banana | nucleus | 53.51 | 58.47 |
| GSMUA_Achr9P20710_001 | Banana | cytosol | 49.54 | 55.49 |
| GSMUA_Achr7P16500_001 | Banana | plastid | 40.93 | 53.74 |
| Os02t0450000-01 | Rice | extracellular | 54.3 | 50.62 |
| Zm00001d015889_P001 | Maize | nucleus | 52.85 | 50.32 |
| Zm00001d004164_P001 | Maize | cytosol | 50.86 | 49.61 |
| Os04t0261400-01 | Rice | cytosol | 50.6 | 49.61 |
| Zm00001d025091_P001 | Maize | nucleus | 50.2 | 48.97 |
| Zm00001d053254_P001 | Maize | nucleus | 51.39 | 48.44 |
| TraesCS2B01G073600.1 | Wheat | cytosol | 50.99 | 47.89 |
| TraesCS2A01G059900.1 | Wheat | cytosol | 50.86 | 47.76 |
| TraesCSU01G024900.1 | Wheat | nucleus | 50.73 | 47.4 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400079650 | EnsemblPlantsGene:PGSC0003DMG400031021 | EntrezGene:102579963 | InterPro:RNaseH-like_sf | ncoils:Coil | PANTHER:PTHR32166 |
| PANTHER:PTHR32166:SF50 | PGSC:PGSC0003DMG400031021 | RefSeq:XP_006348067.1 | SUPFAM:SSF53098 | UniParc:UPI000296A1FA | UniProt:M1D279 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400031021]
Coordinates
chr3:-:40780310..40783143
Molecular Weight (calculated)
84685.0 Da
IEP (calculated)
8.075
GRAVY (calculated)
-0.257
Length
755 amino acids
Sequence
(BLAST)
(BLAST)
001: MADVNVNSVL TSSEDMAEKA LSKRYEGLVA VRTKAIKGKG AWYWAHLEPI LIQNPETNLP KAVKLKCTLC DAAFSASNPS RTATEHLKRG TCPNFGSVLR
101: PISQLPPLAS PTSQNNHRKR SSPLTGTSSN SQQFGVVNTS PRFCGEMGYS PLQTAQAIVT HTGLNQQHLM LSGGKEDLDA LAMLEDSVKR LKSLKNSPGP
201: ALCKDQVDSA FNLLADWFYE SCGTVTLSSL EHPKFKAFLN QVGLPEVSRK DFVGEKLDSK FEEARVESEA RIRDAAFFQV SSDGWGRDIC KYGEDTVIKF
301: IINLPNGTNV FHKAVYKGGL VPSEYAEEVL RETIKGLCGN VVQRCVGIVG DKYKGKALRN LELQNHWMVN LSCQLHGFIS LLKDFGRELP LFKIVTDNCL
401: KIANLFNSKS QIRNHFRKFR SHGVELAGLI RVPSADCNLS KNYGPVIAML EDILSYARIL QLIVLDDSYK VSCIEDPVAK EVAEMIQDVG FWNDVEAVHS
501: LVKLIKEMTD DIEVERPLVG QCLLLWEELR AKVKDWCAKF SIAEGPIEKI IDTRFKKNYH PAWSAAFVLD PLYLVRDASG KYLPPFKRLT HDQEKDIDKL
601: ITRLVPREEA PTALMELMKW RSEGLDPLYA QAVQVKQRDP VTGRMKIANP QSSRLVWETC LKEFKSLGKV AVRLLFLQAT SCGFKCNWSF MRWVSLQGQS
701: RVGMDRAQRM IFIAAHAKLE KRDFSSDEEK DAEMLTTANG EDDMFNEVFV DAPSV
101: PISQLPPLAS PTSQNNHRKR SSPLTGTSSN SQQFGVVNTS PRFCGEMGYS PLQTAQAIVT HTGLNQQHLM LSGGKEDLDA LAMLEDSVKR LKSLKNSPGP
201: ALCKDQVDSA FNLLADWFYE SCGTVTLSSL EHPKFKAFLN QVGLPEVSRK DFVGEKLDSK FEEARVESEA RIRDAAFFQV SSDGWGRDIC KYGEDTVIKF
301: IINLPNGTNV FHKAVYKGGL VPSEYAEEVL RETIKGLCGN VVQRCVGIVG DKYKGKALRN LELQNHWMVN LSCQLHGFIS LLKDFGRELP LFKIVTDNCL
401: KIANLFNSKS QIRNHFRKFR SHGVELAGLI RVPSADCNLS KNYGPVIAML EDILSYARIL QLIVLDDSYK VSCIEDPVAK EVAEMIQDVG FWNDVEAVHS
501: LVKLIKEMTD DIEVERPLVG QCLLLWEELR AKVKDWCAKF SIAEGPIEKI IDTRFKKNYH PAWSAAFVLD PLYLVRDASG KYLPPFKRLT HDQEKDIDKL
601: ITRLVPREEA PTALMELMKW RSEGLDPLYA QAVQVKQRDP VTGRMKIANP QSSRLVWETC LKEFKSLGKV AVRLLFLQAT SCGFKCNWSF MRWVSLQGQS
701: RVGMDRAQRM IFIAAHAKLE KRDFSSDEEK DAEMLTTANG EDDMFNEVFV DAPSV
001: MATTNAHTAT QQTPPPPPPP PPAPAPPAMD GLTTDELTAK ALNKRYEGLM TVRTKAVKGK GAWYWTHLEP ILVRNTDTGL PKAVKLRCSL CDAVFSASNP
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (so /.../NCBI BLink). [Source:TAIR;Acc:AT1G12380]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.