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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
extracellular: 26072143
msms PMID: 26072143 doi
B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d015889_P001 Maize nucleus 78.89 80.58
Zm00001d053254_P001 Maize nucleus 72.35 73.16
Os04t0261400-01 Rice cytosol 66.17 69.61
GSMUA_Achr2P03190_001 Banana nucleus 41.11 61.33
VIT_16s0022g01740.t01 Wine grape nucleus 54.44 57.87
VIT_02s0241g00050.t01 Wine grape nucleus 54.57 57.11
KRH57308 Soybean nucleus 52.72 56.56
KRH28018 Soybean nucleus 50.99 56.5
KRH04039 Soybean nucleus 52.47 56.14
KRH77421 Soybean cytosol 51.85 56.0
GSMUA_Achr9P20710_001 Banana cytosol 46.17 55.49
CDX98069 Canola nucleus 50.49 54.9
CDY26560 Canola nucleus 50.62 54.89
AT1G62870.1 Thale cress cytosol 51.23 54.46
Solyc03g007180.1.1 Tomato nucleus 50.74 54.44
Bra026973.1-P Field mustard nucleus 50.12 54.35
PGSC0003DMT400079650 Potato cytosol, nucleus, plastid 50.62 54.3
CDY31263 Canola nucleus 50.37 54.11
CDY30075 Canola nucleus 50.74 53.94
CDY21048 Canola nucleus 50.0 53.93
Bra019761.1-P Field mustard nucleus 50.25 53.76
Bra016775.1-P Field mustard nucleus 49.75 53.66
Bra027012.1-P Field mustard nucleus 17.78 53.53
KRG92459 Soybean cytosol, nucleus 45.68 53.31
CDY15994 Canola nucleus 49.38 52.91
KRH34341 Soybean cytosol, nucleus 46.54 52.8
CDY46928 Canola cytosol 17.65 52.57
AT1G12380.1 Thale cress cytosol, nucleus, plastid 51.36 52.46
Solyc08g079550.1.1 Tomato nucleus 52.96 52.25
PGSC0003DMT400010029 Potato nucleus 52.72 51.76
KRH09233 Soybean nucleus 47.53 51.68
CDY68721 Canola nucleus 17.53 51.26
KRH38730 Soybean cytosol 48.27 51.25
KRG96010 Soybean cytosol 4.2 41.98
Protein Annotations
EnsemblPlants:Os02t0450000-01EnsemblPlantsGene:Os02g0450000EntrezGene:4329262InterPro:RNaseH-like_sfPANTHER:PTHR32166PANTHER:PTHR32166:SF53
ProteinID:BAD28927.1ProteinID:BAF08672.1ProteinID:BAS78501.1ProteinID:EAZ22895.1RefSeq:XP_015623081.1RefSeq:XP_015623082.1
RefSeq:XP_015623083.1RefSeq:XP_015623084.1RefSeq:XP_015623085.1SEG:segSUPFAM:SSF53098UniParc:UPI00003CE84C
UniProt:Q6EQZ3MapMan:35.2::::
Description
Similar to OSIGBa0107A02.7 protein. (Os02t0450000-01);Similar to OSIGBa0107A02.7 protein. (Os02t0450000-02)
Coordinates
chr2:+:14681077..14684806
Molecular Weight (calculated)
88202.3 Da
IEP (calculated)
8.136
GRAVY (calculated)
-0.284
Length
810 amino acids
Sequence
(BLAST)
001: MSTAAKEEAA ASAPAPAMGG EEAAARAAQK RYEGLLTVRA KAVKGKGAWY WAHLEPVLIP AADTGMPPKA VKLRCGLCSA VFSASNPSRT ASEHLKRGTC
101: PNFSAPPPGA AAASGSSGSQ HQQQTPQAAL QALPPPNSTA SSPIPISSIA PSSPRHPHHH SQPQQPQSHH HHHHHSGSRK RHSMPPAYTA AEPVSHHHHL
201: VVVDPSTVYS PPLPALPPPP PQQPQSALVL SGGKEDLGAL AMLEDSVKRL KSPKASPGAM LPKPQADAAL ALLAEWFLES SGGVSLSAVA NPKLRSFLRH
301: VGLPELQRTD LAGARLDARF AEARADATAR VRDALFFQLA ADGWREQVVT LCVNLPNGTS VFHRGVPVPA PAPSDYAEEV LLDAVASVSA SGSSNDLHHC
401: AGIVADRFKS KALRDLENKH HWMVNLSCQI HGFTRLVRDF ARELPLFRSA AAKSAKLAAY FNAKPTVRSL LHKHQIQELG HASLLRVAHV PFNSSGSDYR
501: AAFEMLEDVL TSARPLQLAV LEESYKLVCI DDSAAREMAD MLQDGSFWSE VEAVHLLVKL IMDMVKEMET DRPLVGQCLP LWEDLRGKVR DWCDKFNTDE
601: GAALNVVEKR FRKNYHPAWS AAFILDPLYL IKDASGRYLP PFKFLTPDQE KDVDMLITRM VSREEAHIAV MELMKWRTEG LDPLYAQAVQ VRQPDPSTGK
701: MKVANKQSSR LVWETCLSEL KSLGKVAVRL IFLHATARGF RCSPSMLRWL SAPGSLAGGI DRAHRLVFVA ANSKLERRDF SSDEDKDAEL LTEGDDDVLN
801: EPGSLERSSV
Best Arabidopsis Sequence Match ( AT1G62870.1 )
(BLAST)
001: MATTTNATTT ATQQQTQTQS PTQQPSAEEL ATKALQKRYE GLMMVRTKAV KGKGAWYWSH LEPILLHNTD TGFPKAVKLR CSLCDAVFSA SNPSRTASEH
101: LKRGTCPNFN SLPKPISTIS PSPPPPPSSS HRKRNSSAVE ALNHHHHHPH HHHQGSYNVT PLSVVDPSRF CGQFPVTQQP HLMLSGGKDD LGPLAMLEDS
201: VKKLKSPKTS QTRNLTKAQI DSALDSLSDW VFESCGSVSL SGLEHPKLRA FLTQVGLPII SRRDFVTGRL DLKYEDSRAE AESRIHDAMF FQIASDGWKF
301: DSSGENLVNL IVNLPNGTSL YRRAVFVNGA VPSNYAEEVL WETVRGICGN SPQRCVGIVS DRFMSKALRN LESQHQWMVN LSCQFQGFNS LIRDFVKELP
401: LFKSVSQSCS RLVNFVNSTA QIRNAVCKYQ LQEQGETRML HLPLDSSLFE PLYNLLEDVL SFARAIQLVM HDDVCKAVLM EDHMAREVGE MVGDVGFWNE
501: VEAVYLLLKL VKEMARRIEE ERPLVGQCLP LWDELRSKIK DWYAKFNVVE ERQVEKIVER RFKKSYHPAW AAAFILDPLY LIKDSSGKYL PPFKCLSPEQ
601: EKDVDKLITR LVSRDEAHIA MMELMKWRTE GLDPVYARAV QMKERDPVSG KMRIANPQSS RLVWETYLSE FRSLGRVAVR LIFLHATSCG FKCNSSVLRW
701: VNSNGRSRAA VDRAQKLIFI SANSKFERRD FSNEEERDAE LLAMANGEDD VLNDVLIDTS SV
Arabidopsis Description
F16P17.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9LQ19]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.