CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77421	Soybean	cytosol	89.19	86.93
KRH57308	Soybean	nucleus	76.47	74.04
KRH04039	Soybean	nucleus	76.2	73.58
VIT_02s0241g00050.t01	Wine grape	nucleus	72.91	68.86
AT1G62870.1	Thale cress	cytosol	66.76	64.04
CDY26560	Canola	nucleus	65.12	63.72
Bra026973.1-P	Field mustard	nucleus	64.84	63.45
CDX98069	Canola	nucleus	64.16	62.95
Solyc08g079550.1.1	Tomato	nucleus	70.45	62.73
PGSC0003DMT400010029	Potato	nucleus	70.45	62.42
CDY21048	Canola	nucleus	63.75	62.05
CDY30075	Canola	nucleus	64.57	61.94
Bra016775.1-P	Field mustard	nucleus	63.61	61.92
CDY15994	Canola	nucleus	64.02	61.9
Bra019761.1-P	Field mustard	nucleus	64.02	61.82
CDY31263	Canola	nucleus	63.61	61.67
AT1G12380.1	Thale cress	cytosol, nucleus, plastid	65.8	60.66
GSMUA_Achr2P12300_001	Banana	nucleus	56.77	60.06
GSMUA_Achr2P03190_001	Banana	nucleus	44.32	59.67
KRH34341	Soybean	cytosol, nucleus	58.28	59.66
KRG92459	Soybean	cytosol, nucleus	56.63	59.65
KRH38730	Soybean	cytosol	60.6	58.06
KRG96010	Soybean	cytosol	6.43	58.02
KRH09233	Soybean	nucleus	58.14	57.05
GSMUA_Achr9P20710_001	Banana	cytosol	52.39	56.82
CDY46928	Canola	cytosol	20.66	55.51
Bra027012.1-P	Field mustard	nucleus	20.38	55.39
CDY68721	Canola	nucleus	20.66	54.51
GSMUA_Achr7P16500_001	Banana	plastid	42.82	54.43
Os02t0450000-01	Rice	extracellular	56.5	50.99
Zm00001d015889_P001	Maize	nucleus	53.76	49.56
Zm00001d004164_P001	Maize	cytosol	51.85	48.97
Os04t0261400-01	Rice	cytosol	51.3	48.7
Zm00001d053254_P001	Maize	nucleus	52.53	47.94
Zm00001d025091_P001	Maize	nucleus	49.93	47.16
TraesCS2B01G073600.1	Wheat	cytosol	50.89	46.27
TraesCS2A01G059900.1	Wheat	cytosol	50.75	46.14
TraesCSU01G024900.1	Wheat	nucleus	50.89	46.04

Protein Annotations

EMBL:ACUP02006738	EnsemblPlants:KRH28018	EnsemblPlantsGene:GLYMA_11G029400	EntrezGene:102663387	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:RNaseH-like_sf	PANTHER:PTHR32166	PANTHER:PTHR32166:SF50	ProteinID:KRH28018	ProteinID:KRH28018.1
SEG:seg	SUPFAM:SSF53098	UniParc:UPI00023CDAB4	UniProt:I1LGL0	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr11:+:2123508..2126691

Molecular Weight (calculated)

82583.6 Da

IEP (calculated)

9.015

GRAVY (calculated)

-0.357

Length

731 amino acids

Sequence
(BLAST)

001: MASTTPSADS ASADEVTAKA VNKRYEGLVT VRTKAIKGKG AWYWPHLEPM LLHNTETGLP KAVKLRCSLC DAVFSASNPS RTASEHLKRG TCPNFNSAAK
101: PISSVSPSSA VAAMALSPPS SPTNHNHRKR ISSSYDAPSQ QQQPNLVLSG GKDDLGALAM LEDSVKKLKS PKTSAGPTLT KSQVDSAFDY LADWVYESCG
201: SVSFSALEHP KFRAFLNQVG LPTVSIREFT GSRLDAKFEE AKAYSEARIR DALFFQVASE GWKWKGKKYC EEKLVNMSVN LPNGTSLHRR TLFVTGSAPS
301: NYAQEVMWET LTGICGNVVQ QCVGIVADKF KNKALRNLEN RNPWMVNLSC QYQGFNSLIK DFNKELPFFN TVTHNCLRLA SFINFKSQVR SSFDMYQQQE
401: YGHTWLLRMP LPSRQFEYFD TVYAMMEDVL SSVRALQLLL LNENFKMASI ENPNAREVGD MIRDVGFWND LEAVHSLVKL VKEMVKEIET ERPLVGQCLP
501: LWGELRARVK DWCSKFHVAE AAVEKVIEKR FKKNYHPAWA AAYILDPLYL VRDTSGKYLP PFNYLTPEQE KDVDKLITRL VSRDEAHIVL MELMKWRTQG
601: LDPVYARAVQ MKERDPVTGK MRLVNPQSSR LVWETYLTEF KSLGRVAVRL IFLHATSRGF KCNWSSWRWV CSQGNSRAAL DRAHKLIFIA AHSKFERKDF
701: STDEEKNAEL FSLANGEDDV LNEVFVETSS A

Best Arabidopsis Sequence Match ( AT1G62870.1 )
(BLAST)

001: MATTTNATTT ATQQQTQTQS PTQQPSAEEL ATKALQKRYE GLMMVRTKAV KGKGAWYWSH LEPILLHNTD TGFPKAVKLR CSLCDAVFSA SNPSRTASEH
101: LKRGTCPNFN SLPKPISTIS PSPPPPPSSS HRKRNSSAVE ALNHHHHHPH HHHQGSYNVT PLSVVDPSRF CGQFPVTQQP HLMLSGGKDD LGPLAMLEDS
201: VKKLKSPKTS QTRNLTKAQI DSALDSLSDW VFESCGSVSL SGLEHPKLRA FLTQVGLPII SRRDFVTGRL DLKYEDSRAE AESRIHDAMF FQIASDGWKF
301: DSSGENLVNL IVNLPNGTSL YRRAVFVNGA VPSNYAEEVL WETVRGICGN SPQRCVGIVS DRFMSKALRN LESQHQWMVN LSCQFQGFNS LIRDFVKELP
401: LFKSVSQSCS RLVNFVNSTA QIRNAVCKYQ LQEQGETRML HLPLDSSLFE PLYNLLEDVL SFARAIQLVM HDDVCKAVLM EDHMAREVGE MVGDVGFWNE
501: VEAVYLLLKL VKEMARRIEE ERPLVGQCLP LWDELRSKIK DWYAKFNVVE ERQVEKIVER RFKKSYHPAW AAAFILDPLY LIKDSSGKYL PPFKCLSPEQ
601: EKDVDKLITR LVSRDEAHIA MMELMKWRTE GLDPVYARAV QMKERDPVSG KMRIANPQSS RLVWETYLSE FRSLGRVAVR LIFLHATSCG FKCNSSVLRW
701: VNSNGRSRAA VDRAQKLIFI SANSKFERRD FSNEEERDAE LLAMANGEDD VLNDVLIDTS SV

Arabidopsis Description

F16P17.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9LQ19]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.