Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21048 | Canola | nucleus | 96.55 | 96.94 |
| CDY26560 | Canola | nucleus | 85.01 | 85.81 |
| CDY15994 | Canola | nucleus | 85.01 | 84.79 |
| CDX98069 | Canola | nucleus | 82.89 | 83.89 |
| CDY30075 | Canola | nucleus | 83.16 | 82.28 |
| AT1G12380.1 | Thale cress | cytosol, nucleus, plastid | 85.54 | 81.34 |
| CDY46928 | Canola | cytosol | 23.34 | 64.71 |
| VIT_02s0241g00050.t01 | Wine grape | nucleus | 65.78 | 64.08 |
| KRH57308 | Soybean | nucleus | 63.79 | 63.71 |
| KRH28018 | Soybean | nucleus | 61.67 | 63.61 |
| KRH77421 | Soybean | cytosol | 63.26 | 63.6 |
| KRH04039 | Soybean | nucleus | 63.66 | 63.41 |
| CDY68721 | Canola | nucleus | 22.94 | 62.45 |
| Solyc08g079550.1.1 | Tomato | nucleus | 64.72 | 59.44 |
| PGSC0003DMT400010029 | Potato | nucleus | 64.32 | 58.79 |
| GSMUA_Achr2P03190_001 | Banana | nucleus | 41.38 | 57.46 |
| GSMUA_Achr2P12300_001 | Banana | nucleus | 52.25 | 57.02 |
| GSMUA_Achr9P20710_001 | Banana | cytosol | 49.6 | 55.49 |
| GSMUA_Achr7P16500_001 | Banana | plastid | 41.25 | 54.09 |
| Os04t0261400-01 | Rice | cytosol | 51.86 | 50.78 |
| Zm00001d015889_P001 | Maize | nucleus | 53.05 | 50.44 |
| Os02t0450000-01 | Rice | extracellular | 54.11 | 50.37 |
| Zm00001d004164_P001 | Maize | cytosol | 50.4 | 49.1 |
| Zm00001d025091_P001 | Maize | nucleus | 49.87 | 48.58 |
| Zm00001d053254_P001 | Maize | nucleus | 50.53 | 47.57 |
| TraesCS2B01G073600.1 | Wheat | cytosol | 50.27 | 47.14 |
| TraesCSU01G024900.1 | Wheat | nucleus | 50.13 | 46.78 |
| TraesCS2A01G059900.1 | Wheat | cytosol | 49.73 | 46.64 |
Protein Annotations
| EnsemblPlants:CDY31263 | EnsemblPlantsGene:GSBRNA2T00047416001 | GO:A0A078H335 | InterPro:RNaseH-like_sf | PANTHER:PTHR32166 | PANTHER:PTHR32166:SF50 |
| ProteinID:CDY31263 | ProteinID:CDY31263.1 | SEG:seg | SUPFAM:SSF53098 | UniParc:UPI0004EE1B62 | UniProt:A0A078H335 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC08g15580DBnaC08g15580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H335]
Coordinates
chrLK032269:-:320585..322849
Molecular Weight (calculated)
84515.4 Da
IEP (calculated)
8.746
GRAVY (calculated)
-0.384
Length
754 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTTNTPTAA QPQQQQTPPP PPAITTEELT VKALNKRYEG LTTVRNKAVK GKGAWYWTHL EPTLVRNTDT GLPKAVKLRC SLCDAVFSAS NPSRTASEHL
101: KRGTCPNFTS SVATPVSAVS PSSSSSPSHH RKRHSSGAVP SRLNPPPSYH VTPITVVDPS RFSGGVELQY SPPPPPPPRL MLSGGKDDLG PLAMLEDSVK
201: KLKSPKPSHA LSLTRSQIES ALDSLSDWVF ESCGSVSLSG LEHPKFRAFL TQVGLPIVSK RDFATTRLEL KYEEARSVSE SRIRDAMFLQ IASDGWRESL
301: VSLVVNLPNG TSVYRRAVLV NGAVPANYAE EVLLETVKGI CGNSPQRCVG IVSDKFNNKA LKSLESQHQW MVNLSCQHQE LKSLIKDFIK ELPLFKSVSR
401: NCMRLAKFTN NTAEIRHAHR KYQMQEHGES IMLRVPLHCK DCVFEPLFNL LEDVLSSARA IHSVMHDDAC KSVLMEDHTA REVREMVGDQ GFWNEVEAVH
501: ALIKLVKEMA RRIEEEKLLV GQCLPLWDEL RAKVKDWDSK FNVGEGHVEK LVERRFKKSY HPAWAAAFIL DPLYLIRDSS GNYLPPFKCL SPEQEKDVDK
601: LITRLVSREE AHIALMELMK WRTEGLDPMY ARAVQMKERD PVTGKMRIAN PQSSRLVWET YLSEFRSLGK VAVRLIFLHA TTCGFKCNSS LLKWVSSHGR
701: SHAAMDRAQK MIFISANSKF ERRDFSNEED RDAELLAMAN GDENLLNDVL VDTS
101: KRGTCPNFTS SVATPVSAVS PSSSSSPSHH RKRHSSGAVP SRLNPPPSYH VTPITVVDPS RFSGGVELQY SPPPPPPPRL MLSGGKDDLG PLAMLEDSVK
201: KLKSPKPSHA LSLTRSQIES ALDSLSDWVF ESCGSVSLSG LEHPKFRAFL TQVGLPIVSK RDFATTRLEL KYEEARSVSE SRIRDAMFLQ IASDGWRESL
301: VSLVVNLPNG TSVYRRAVLV NGAVPANYAE EVLLETVKGI CGNSPQRCVG IVSDKFNNKA LKSLESQHQW MVNLSCQHQE LKSLIKDFIK ELPLFKSVSR
401: NCMRLAKFTN NTAEIRHAHR KYQMQEHGES IMLRVPLHCK DCVFEPLFNL LEDVLSSARA IHSVMHDDAC KSVLMEDHTA REVREMVGDQ GFWNEVEAVH
501: ALIKLVKEMA RRIEEEKLLV GQCLPLWDEL RAKVKDWDSK FNVGEGHVEK LVERRFKKSY HPAWAAAFIL DPLYLIRDSS GNYLPPFKCL SPEQEKDVDK
601: LITRLVSREE AHIALMELMK WRTEGLDPMY ARAVQMKERD PVTGKMRIAN PQSSRLVWET YLSEFRSLGK VAVRLIFLHA TTCGFKCNSS LLKWVSSHGR
701: SHAAMDRAQK MIFISANSKF ERRDFSNEED RDAELLAMAN GDENLLNDVL VDTS
001: MATTNAHTAT QQTPPPPPPP PPAPAPPAMD GLTTDELTAK ALNKRYEGLM TVRTKAVKGK GAWYWTHLEP ILVRNTDTGL PKAVKLRCSL CDAVFSASNP
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (so /.../NCBI BLink). [Source:TAIR;Acc:AT1G12380]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.