Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G059900.1 | Wheat | cytosol | 94.03 | 94.03 |
| TraesCSU01G024900.1 | Wheat | nucleus | 93.78 | 93.32 |
| Os04t0261400-01 | Rice | cytosol | 74.88 | 78.18 |
| Zm00001d004164_P001 | Maize | cytosol | 70.4 | 73.13 |
| Zm00001d025091_P001 | Maize | nucleus | 69.4 | 72.09 |
| GSMUA_Achr2P03190_001 | Banana | nucleus | 39.43 | 58.38 |
| VIT_16s0022g01740.t01 | Wine grape | nucleus | 49.75 | 52.49 |
| GSMUA_Achr9P20710_001 | Banana | cytosol | 43.91 | 52.37 |
| KRH34341 | Soybean | cytosol, nucleus | 46.39 | 52.24 |
| KRG92459 | Soybean | cytosol, nucleus | 45.02 | 52.16 |
| KRH57308 | Soybean | nucleus | 48.88 | 52.05 |
| KRH04039 | Soybean | nucleus | 48.88 | 51.92 |
| VIT_02s0241g00050.t01 | Wine grape | nucleus | 49.63 | 51.55 |
| CDY26560 | Canola | nucleus | 47.64 | 51.27 |
| Solyc03g007180.1.1 | Tomato | nucleus | 48.13 | 51.26 |
| Bra026973.1-P | Field mustard | nucleus | 47.51 | 51.14 |
| PGSC0003DMT400079650 | Potato | cytosol, nucleus, plastid | 47.89 | 50.99 |
| KRH28018 | Soybean | nucleus | 46.27 | 50.89 |
| KRH77421 | Soybean | cytosol | 46.89 | 50.27 |
| CDY31263 | Canola | nucleus | 47.14 | 50.27 |
| CDX98069 | Canola | nucleus | 46.52 | 50.2 |
| CDY21048 | Canola | nucleus | 46.77 | 50.07 |
| Bra016775.1-P | Field mustard | nucleus | 46.52 | 49.8 |
| CDY15994 | Canola | nucleus | 46.77 | 49.74 |
| KRH09233 | Soybean | nucleus | 45.9 | 49.53 |
| CDY30075 | Canola | nucleus | 46.89 | 49.48 |
| AT1G12380.1 | Thale cress | cytosol, nucleus, plastid | 48.63 | 49.31 |
| AT1G62870.1 | Thale cress | cytosol | 46.64 | 49.21 |
| Bra019761.1-P | Field mustard | nucleus | 46.27 | 49.14 |
| PGSC0003DMT400010029 | Potato | nucleus | 49.63 | 48.36 |
| Solyc08g079550.1.1 | Tomato | nucleus | 49.25 | 48.23 |
| KRH38730 | Soybean | cytosol | 45.65 | 48.1 |
| Bra027012.1-P | Field mustard | nucleus | 15.67 | 46.84 |
| CDY46928 | Canola | cytosol | 15.8 | 46.69 |
| CDY68721 | Canola | nucleus | 15.92 | 46.21 |
| KRG96010 | Soybean | cytosol | 3.73 | 37.04 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G073600.1 | EnsemblPlantsGene:TraesCS2B01G073600 | InterPro:RNaseH-like_sf | PANTHER:PTHR32166 | PANTHER:PTHR32166:SF53 | SEG:seg |
| SUPFAM:SSF101447 | SUPFAM:SSF53098 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2B:+:39418044..39420458
Molecular Weight (calculated)
86709.7 Da
IEP (calculated)
8.100
GRAVY (calculated)
-0.229
Length
804 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAPEEGDAA ASGPSAPPPP PAPAPMAMAE PGAMGPEEAA ARKRYEALMQ VRAKALKGKG AWYWGHLEPV LVPPPASGAP PKAARLRCAL CAATFSASNP
101: SRTATEHLKR GACPNFAAAQ GAPPPPPPPP PPPPQNQHQQ LQLVAVSSPA SSIVPISSIP PSSSSSSQRR HSTGVGGRKR HALAAAYASV EAAAHQHHVM
201: VADPAGYSPT PPTPPGMPAP RQLLSGGRGD LAPLAMLEDS VKRLKSPSAS PGAMLPRPQA EAALSLLADW FLESSGSASL SAVEHPKLKN FLRQVGLPEI
301: SRADLAGARL DTRFAEARAD AAARFREARF FQLAADGLRE QVITLSVNLP NDTSVFHRAV PMPAPASASP DYAQELFLDA ASSVSASSGD IRHCAGIVAD
401: RFGSKTLRDL ETKHHWMVNL TCQVHGLSRL ISDMARELPL FNNAASNCAK IASYFNTTPS VRALLHKHQV QEHGHAFLLP IAAPPYNGGE FAAAFVMLES
501: ILTSARPLQL AVLEESYKVV CIDDPAAREI AAMVQNVAFW TEVEATHSVV KLIMDLVKEM ETERPLVGQC LPLWEDLRGK VRGWCRKFSV EEAPAMNVVE
601: SRFRKNYHPA WSAAFILDPL YLIKDAGRRY LPPFNYLTPE QEKDVDRLIT RLVSPEEAHL ALMELMKWRS EGLDPLYAQA VQVRQPDPST GKMKIANKQS
701: SRLVWETCLS EFKSLGKVAV RLIFLHATAK GFKCTPSMTR WLTAPGSSAG SIGRAHRLVF IAANSKLERR DFSNDDDKDV ELLTEGDDDM LTETGNVDPS
801: SSSV
101: SRTATEHLKR GACPNFAAAQ GAPPPPPPPP PPPPQNQHQQ LQLVAVSSPA SSIVPISSIP PSSSSSSQRR HSTGVGGRKR HALAAAYASV EAAAHQHHVM
201: VADPAGYSPT PPTPPGMPAP RQLLSGGRGD LAPLAMLEDS VKRLKSPSAS PGAMLPRPQA EAALSLLADW FLESSGSASL SAVEHPKLKN FLRQVGLPEI
301: SRADLAGARL DTRFAEARAD AAARFREARF FQLAADGLRE QVITLSVNLP NDTSVFHRAV PMPAPASASP DYAQELFLDA ASSVSASSGD IRHCAGIVAD
401: RFGSKTLRDL ETKHHWMVNL TCQVHGLSRL ISDMARELPL FNNAASNCAK IASYFNTTPS VRALLHKHQV QEHGHAFLLP IAAPPYNGGE FAAAFVMLES
501: ILTSARPLQL AVLEESYKVV CIDDPAAREI AAMVQNVAFW TEVEATHSVV KLIMDLVKEM ETERPLVGQC LPLWEDLRGK VRGWCRKFSV EEAPAMNVVE
601: SRFRKNYHPA WSAAFILDPL YLIKDAGRRY LPPFNYLTPE QEKDVDRLIT RLVSPEEAHL ALMELMKWRS EGLDPLYAQA VQVRQPDPST GKMKIANKQS
701: SRLVWETCLS EFKSLGKVAV RLIFLHATAK GFKCTPSMTR WLTAPGSSAG SIGRAHRLVF IAANSKLERR DFSNDDDKDV ELLTEGDDDM LTETGNVDPS
801: SSSV
001: MATTNAHTAT QQTPPPPPPP PPAPAPPAMD GLTTDELTAK ALNKRYEGLM TVRTKAVKGK GAWYWTHLEP ILVRNTDTGL PKAVKLRCSL CDAVFSASNP
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (so /.../NCBI BLink). [Source:TAIR;Acc:AT1G12380]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.