Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21048 | Canola | nucleus | 99.73 | 99.73 |
| Bra026973.1-P | Field mustard | nucleus | 85.75 | 86.21 |
| Bra019761.1-P | Field mustard | nucleus | 83.49 | 82.83 |
| AT1G12380.1 | Thale cress | cytosol, nucleus, plastid | 85.89 | 81.34 |
| Bra027012.1-P | Field mustard | nucleus | 23.44 | 65.43 |
| VIT_02s0241g00050.t01 | Wine grape | nucleus | 65.78 | 63.82 |
| KRH77421 | Soybean | cytosol | 63.65 | 63.73 |
| KRH28018 | Soybean | nucleus | 61.92 | 63.61 |
| KRH57308 | Soybean | nucleus | 63.91 | 63.58 |
| KRH04039 | Soybean | nucleus | 63.91 | 63.41 |
| Solyc08g079550.1.1 | Tomato | nucleus | 64.85 | 59.32 |
| PGSC0003DMT400010029 | Potato | nucleus | 64.45 | 58.67 |
| GSMUA_Achr2P03190_001 | Banana | nucleus | 41.28 | 57.09 |
| GSMUA_Achr2P12300_001 | Banana | nucleus | 52.33 | 56.87 |
| GSMUA_Achr9P20710_001 | Banana | cytosol | 49.27 | 54.9 |
| GSMUA_Achr7P16500_001 | Banana | plastid | 41.28 | 53.91 |
| Zm00001d015889_P001 | Maize | nucleus | 52.86 | 50.06 |
| Os02t0450000-01 | Rice | extracellular | 53.66 | 49.75 |
| Os04t0261400-01 | Rice | cytosol | 50.87 | 49.61 |
| Zm00001d004164_P001 | Maize | cytosol | 49.53 | 48.06 |
| Zm00001d025091_P001 | Maize | nucleus | 48.87 | 47.42 |
| Zm00001d053254_P001 | Maize | nucleus | 50.2 | 47.07 |
| TraesCS2B01G073600.1 | Wheat | cytosol | 49.8 | 46.52 |
| TraesCSU01G024900.1 | Wheat | nucleus | 49.53 | 46.04 |
| TraesCS2A01G059900.1 | Wheat | cytosol | 49.13 | 45.9 |
Protein Annotations
| EnsemblPlants:Bra016775.1 | EnsemblPlants:Bra016775.1-P | EnsemblPlantsGene:Bra016775 | InterPro:RNaseH-like_sf | PANTHER:PTHR32166 | PANTHER:PTHR32166:SF50 |
| SEG:seg | SUPFAM:SSF53098 | UniParc:UPI000254604B | UniProt:M4DJU7 | MapMan:35.2 | : |
Description
AT1G62870 (E=0.0) | unknown protein
Coordinates
chrA08:+:19909008..19911263
Molecular Weight (calculated)
83945.6 Da
IEP (calculated)
8.342
GRAVY (calculated)
-0.367
Length
751 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTTNTPTAA QPQQQQTPPP PPEITTEELT AKALNKRYEG LTTVRNKAVK GKGAWYWTHL EPTLVRNTDT GLPKAVKLRC SLCDAVFSAS NPSRTASEHL
101: KRGTCPNFTS SVAPPVSAVS PSSSSSPSHH RKRQSSGAVP SRLNPPPSYH VTPITVVDPS RFCGGELPYS APPPPRLMLS GGKDDLGPLA MLEDSVKKLK
201: SPKPSHALTL TRSEIESALD SLSDWVFESC GSVSLSGLEH PKFRSFLTQV GLPIVSKRDF ATTRLELKYE EARAVSESRI LDAMFLQIAS DGWRESLVSL
301: VVNLPNGTSV YRRAVLVNGA VPANYAEEVL LETVKGICGN SPQRCVGIVS DKFNNKALKS LESQHQWMVN LSCQHQELKS LIKDFIKELP LFKSVSQNCT
401: RLGNFINNTA EIRNAHRKYQ MQEHGESIML RLPLHCKACV FEPLFNLLED VLSSARAIHS VMHDDACKAV LMEDHTAREV REMVGDQGFW NEVEAVHALT
501: KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKLVE RRFKKSYHPA WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT
601: RLVSRDEAHI ALMELMKWST EGLDPMYARA VQMKERDPVT GKMRIANPQS SRLVWETYLS EFRSLGKVAV RLIFLHATTC GFKCNSSLLK WVSSHGRSHA
701: AMDRAQKMIF ISANSKFERR DFSNEEDRDA ELLAMANGDE NLLNDVLVDT S
101: KRGTCPNFTS SVAPPVSAVS PSSSSSPSHH RKRQSSGAVP SRLNPPPSYH VTPITVVDPS RFCGGELPYS APPPPRLMLS GGKDDLGPLA MLEDSVKKLK
201: SPKPSHALTL TRSEIESALD SLSDWVFESC GSVSLSGLEH PKFRSFLTQV GLPIVSKRDF ATTRLELKYE EARAVSESRI LDAMFLQIAS DGWRESLVSL
301: VVNLPNGTSV YRRAVLVNGA VPANYAEEVL LETVKGICGN SPQRCVGIVS DKFNNKALKS LESQHQWMVN LSCQHQELKS LIKDFIKELP LFKSVSQNCT
401: RLGNFINNTA EIRNAHRKYQ MQEHGESIML RLPLHCKACV FEPLFNLLED VLSSARAIHS VMHDDACKAV LMEDHTAREV REMVGDQGFW NEVEAVHALT
501: KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKLVE RRFKKSYHPA WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT
601: RLVSRDEAHI ALMELMKWST EGLDPMYARA VQMKERDPVT GKMRIANPQS SRLVWETYLS EFRSLGKVAV RLIFLHATTC GFKCNSSLLK WVSSHGRSHA
701: AMDRAQKMIF ISANSKFERR DFSNEEDRDA ELLAMANGDE NLLNDVLVDT S
001: MATTNAHTAT QQTPPPPPPP PPAPAPPAMD GLTTDELTAK ALNKRYEGLM TVRTKAVKGK GAWYWTHLEP ILVRNTDTGL PKAVKLRCSL CDAVFSASNP
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (so /.../NCBI BLink). [Source:TAIR;Acc:AT1G12380]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.