Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G059900.1 | Wheat | cytosol | 93.56 | 94.03 |
| TraesCS2B01G073600.1 | Wheat | cytosol | 93.32 | 93.78 |
| Os04t0261400-01 | Rice | cytosol | 74.13 | 77.79 |
| Zm00001d004164_P001 | Maize | cytosol | 68.69 | 71.71 |
| Zm00001d025091_P001 | Maize | nucleus | 67.57 | 70.54 |
| GSMUA_Achr2P03190_001 | Banana | nucleus | 39.23 | 58.38 |
| VIT_16s0022g01740.t01 | Wine grape | nucleus | 49.38 | 52.36 |
| GSMUA_Achr9P20710_001 | Banana | cytosol | 43.56 | 52.23 |
| KRH57308 | Soybean | nucleus | 48.76 | 52.19 |
| KRH04039 | Soybean | nucleus | 48.76 | 52.05 |
| KRH34341 | Soybean | cytosol, nucleus | 45.79 | 51.82 |
| VIT_02s0241g00050.t01 | Wine grape | nucleus | 49.63 | 51.81 |
| KRG92459 | Soybean | cytosol, nucleus | 44.43 | 51.73 |
| CDY26560 | Canola | nucleus | 47.15 | 51.0 |
| KRH28018 | Soybean | nucleus | 46.04 | 50.89 |
| Bra026973.1-P | Field mustard | nucleus | 47.03 | 50.87 |
| Solyc03g007180.1.1 | Tomato | nucleus | 47.52 | 50.86 |
| PGSC0003DMT400079650 | Potato | cytosol, nucleus, plastid | 47.4 | 50.73 |
| CDX98069 | Canola | nucleus | 46.41 | 50.34 |
| KRH77421 | Soybean | cytosol | 46.66 | 50.27 |
| CDY31263 | Canola | nucleus | 46.78 | 50.13 |
| CDY21048 | Canola | nucleus | 46.29 | 49.8 |
| Bra016775.1-P | Field mustard | nucleus | 46.04 | 49.53 |
| KRH09233 | Soybean | nucleus | 45.67 | 49.53 |
| CDY15994 | Canola | nucleus | 46.29 | 49.47 |
| CDY30075 | Canola | nucleus | 46.53 | 49.34 |
| Bra019761.1-P | Field mustard | nucleus | 46.04 | 49.14 |
| AT1G62870.1 | Thale cress | cytosol | 46.29 | 49.08 |
| AT1G12380.1 | Thale cress | cytosol, nucleus, plastid | 48.02 | 48.93 |
| PGSC0003DMT400010029 | Potato | nucleus | 49.63 | 48.61 |
| Solyc08g079550.1.1 | Tomato | nucleus | 49.26 | 48.48 |
| KRH38730 | Soybean | cytosol | 45.05 | 47.71 |
| Bra027012.1-P | Field mustard | nucleus | 15.84 | 47.58 |
| CDY46928 | Canola | cytosol | 15.97 | 47.43 |
| CDY68721 | Canola | nucleus | 16.09 | 46.93 |
| KRG96010 | Soybean | cytosol | 3.71 | 37.04 |
Protein Annotations
| EnsemblPlants:TraesCSU01G024900.1 | EnsemblPlantsGene:TraesCSU01G024900 | InterPro:RNaseH-like_sf | PANTHER:PTHR32166 | PANTHER:PTHR32166:SF53 | SEG:seg |
| SUPFAM:SSF53098 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrUn:-:24894448..24896874
Molecular Weight (calculated)
86946.9 Da
IEP (calculated)
8.232
GRAVY (calculated)
-0.235
Length
808 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAPEEGDAA ASGSSAPPPP APAPAPPPMA MAEPGAMGPE EAAARKRYEA LMQVRAKALK GKGAWYWGHL EPVLVPPPAS GAPPKAARLR CALCAATFSA
101: SNPSRTATEH LKRGACPNFA AAQGAPPPPP PPPPPQNQHQ QLQLVAVSSP ASSIVPISSI PPSSSSASQR RHSTGGGGGG GRKRHALAAA YASVEAASHQ
201: HHVMVADPAG YSPTPPTPPG MPAPRQLLSG GRGDLAPLAM LEDSVKRLKS PSASPGAMLP RPQAEAALSL LADWFLESSG SASLSAVEHP KLKNFLRQVG
301: LPEISRADLA GARLDARFAE ARADAAARFR EARFFQLAAD GLREQVITLS VNLPNDTSVF HRAVPMPAPA SASPDYAQEL FLDAASSVSA SSGDIRHCAG
401: IVADRFGSKT LRDLETKHHW MVNLTCQVHG LSRLVSDMAR ELPLFNNAAS NCAKIASYFN TTPSVRALLH KHQVQEHGHA FLLPIAAPPY NGGEFAAAFV
501: MLESILTSAR PLQLAVLEES YKVVCIDDPA AREIAAMVQN VAFWTEVEAT HSVVKMIMDL VKEMETERPL VGQCLPLWED LRGKVRGWCR KFSVEEATAM
601: NVVERRFRKN YHPAWSAAFI LDPLYLIKDA GRRYLPPFNY LTPEQEKDVD RLITRLVSPE EAHLALMELM KWRSEGLDPL YAQAVQVRQP DPSTGKMKIA
701: NKQSSRLVWE TCLSEFKSLG KVAVRLIFLH ATAKGFKCTP SMTRWLTAPG SSAGSIGRAH RLVFIAANSK LERRDFSNDD DKDVELLTEG DDDMLTETGN
801: VDPSSSSV
101: SNPSRTATEH LKRGACPNFA AAQGAPPPPP PPPPPQNQHQ QLQLVAVSSP ASSIVPISSI PPSSSSASQR RHSTGGGGGG GRKRHALAAA YASVEAASHQ
201: HHVMVADPAG YSPTPPTPPG MPAPRQLLSG GRGDLAPLAM LEDSVKRLKS PSASPGAMLP RPQAEAALSL LADWFLESSG SASLSAVEHP KLKNFLRQVG
301: LPEISRADLA GARLDARFAE ARADAAARFR EARFFQLAAD GLREQVITLS VNLPNDTSVF HRAVPMPAPA SASPDYAQEL FLDAASSVSA SSGDIRHCAG
401: IVADRFGSKT LRDLETKHHW MVNLTCQVHG LSRLVSDMAR ELPLFNNAAS NCAKIASYFN TTPSVRALLH KHQVQEHGHA FLLPIAAPPY NGGEFAAAFV
501: MLESILTSAR PLQLAVLEES YKVVCIDDPA AREIAAMVQN VAFWTEVEAT HSVVKMIMDL VKEMETERPL VGQCLPLWED LRGKVRGWCR KFSVEEATAM
601: NVVERRFRKN YHPAWSAAFI LDPLYLIKDA GRRYLPPFNY LTPEQEKDVD RLITRLVSPE EAHLALMELM KWRSEGLDPL YAQAVQVRQP DPSTGKMKIA
701: NKQSSRLVWE TCLSEFKSLG KVAVRLIFLH ATAKGFKCTP SMTRWLTAPG SSAGSIGRAH RLVFIAANSK LERRDFSNDD DKDVELLTEG DDDMLTETGN
801: VDPSSSSV
001: MATTTNATTT ATQQQTQTQS PTQQPSAEEL ATKALQKRYE GLMMVRTKAV KGKGAWYWSH LEPILLHNTD TGFPKAVKLR CSLCDAVFSA SNPSRTASEH
101: LKRGTCPNFN SLPKPISTIS PSPPPPPSSS HRKRNSSAVE ALNHHHHHPH HHHQGSYNVT PLSVVDPSRF CGQFPVTQQP HLMLSGGKDD LGPLAMLEDS
201: VKKLKSPKTS QTRNLTKAQI DSALDSLSDW VFESCGSVSL SGLEHPKLRA FLTQVGLPII SRRDFVTGRL DLKYEDSRAE AESRIHDAMF FQIASDGWKF
301: DSSGENLVNL IVNLPNGTSL YRRAVFVNGA VPSNYAEEVL WETVRGICGN SPQRCVGIVS DRFMSKALRN LESQHQWMVN LSCQFQGFNS LIRDFVKELP
401: LFKSVSQSCS RLVNFVNSTA QIRNAVCKYQ LQEQGETRML HLPLDSSLFE PLYNLLEDVL SFARAIQLVM HDDVCKAVLM EDHMAREVGE MVGDVGFWNE
501: VEAVYLLLKL VKEMARRIEE ERPLVGQCLP LWDELRSKIK DWYAKFNVVE ERQVEKIVER RFKKSYHPAW AAAFILDPLY LIKDSSGKYL PPFKCLSPEQ
601: EKDVDKLITR LVSRDEAHIA MMELMKWRTE GLDPVYARAV QMKERDPVSG KMRIANPQSS RLVWETYLSE FRSLGRVAVR LIFLHATSCG FKCNSSVLRW
701: VNSNGRSRAA VDRAQKLIFI SANSKFERRD FSNEEERDAE LLAMANGEDD VLNDVLIDTS SV
101: LKRGTCPNFN SLPKPISTIS PSPPPPPSSS HRKRNSSAVE ALNHHHHHPH HHHQGSYNVT PLSVVDPSRF CGQFPVTQQP HLMLSGGKDD LGPLAMLEDS
201: VKKLKSPKTS QTRNLTKAQI DSALDSLSDW VFESCGSVSL SGLEHPKLRA FLTQVGLPII SRRDFVTGRL DLKYEDSRAE AESRIHDAMF FQIASDGWKF
301: DSSGENLVNL IVNLPNGTSL YRRAVFVNGA VPSNYAEEVL WETVRGICGN SPQRCVGIVS DRFMSKALRN LESQHQWMVN LSCQFQGFNS LIRDFVKELP
401: LFKSVSQSCS RLVNFVNSTA QIRNAVCKYQ LQEQGETRML HLPLDSSLFE PLYNLLEDVL SFARAIQLVM HDDVCKAVLM EDHMAREVGE MVGDVGFWNE
501: VEAVYLLLKL VKEMARRIEE ERPLVGQCLP LWDELRSKIK DWYAKFNVVE ERQVEKIVER RFKKSYHPAW AAAFILDPLY LIKDSSGKYL PPFKCLSPEQ
601: EKDVDKLITR LVSRDEAHIA MMELMKWRTE GLDPVYARAV QMKERDPVSG KMRIANPQSS RLVWETYLSE FRSLGRVAVR LIFLHATSCG FKCNSSVLRW
701: VNSNGRSRAA VDRAQKLIFI SANSKFERRD FSNEEERDAE LLAMANGEDD VLNDVLIDTS SV
Arabidopsis Description
F16P17.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9LQ19]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.