Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- endoplasmic reticulum 1
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400010029 | Potato | nucleus | 96.71 | 96.24 |
| VIT_02s0241g00050.t01 | Wine grape | nucleus | 71.74 | 76.1 |
| KRH04039 | Soybean | nucleus | 65.16 | 70.67 |
| KRH28018 | Soybean | nucleus | 62.73 | 70.45 |
| KRH57308 | Soybean | nucleus | 64.56 | 70.2 |
| KRH77421 | Soybean | cytosol | 63.09 | 69.07 |
| Bra026973.1-P | Field mustard | nucleus | 61.27 | 67.34 |
| CDY26560 | Canola | nucleus | 61.02 | 67.07 |
| CDY15994 | Canola | nucleus | 60.54 | 65.74 |
| CDX98069 | Canola | nucleus | 59.2 | 65.23 |
| AT1G62870.1 | Thale cress | cytosol | 60.54 | 65.22 |
| CDY21048 | Canola | nucleus | 59.44 | 64.98 |
| Bra016775.1-P | Field mustard | nucleus | 59.32 | 64.85 |
| CDY31263 | Canola | nucleus | 59.44 | 64.72 |
| CDY30075 | Canola | nucleus | 59.68 | 64.3 |
| AT1G12380.1 | Thale cress | cytosol, nucleus, plastid | 61.88 | 64.06 |
| Bra019761.1-P | Field mustard | nucleus | 58.71 | 63.67 |
| Solyc03g007180.1.1 | Tomato | nucleus | 58.47 | 63.58 |
| GSMUA_Achr2P03190_001 | Banana | nucleus | 40.93 | 61.88 |
| GSMUA_Achr2P12300_001 | Banana | nucleus | 51.89 | 61.65 |
| CDY46928 | Canola | cytosol | 19.73 | 59.56 |
| Bra027012.1-P | Field mustard | nucleus | 19.49 | 59.48 |
| CDY68721 | Canola | nucleus | 19.73 | 58.48 |
| GSMUA_Achr7P16500_001 | Banana | plastid | 40.44 | 57.74 |
| GSMUA_Achr9P20710_001 | Banana | cytosol | 47.14 | 57.42 |
| Os04t0261400-01 | Rice | cytosol | 49.7 | 52.99 |
| Os02t0450000-01 | Rice | extracellular | 52.25 | 52.96 |
| Zm00001d015889_P001 | Maize | nucleus | 49.7 | 51.45 |
| Zm00001d004164_P001 | Maize | cytosol | 47.99 | 50.9 |
| Zm00001d025091_P001 | Maize | nucleus | 47.62 | 50.52 |
| TraesCSU01G024900.1 | Wheat | nucleus | 48.48 | 49.26 |
| TraesCS2B01G073600.1 | Wheat | cytosol | 48.23 | 49.25 |
| TraesCS2A01G059900.1 | Wheat | cytosol | 48.11 | 49.13 |
| Zm00001d053254_P001 | Maize | nucleus | 47.75 | 48.94 |
Protein Annotations
| EnsemblPlants:Solyc08g079550.1.1 | EnsemblPlantsGene:Solyc08g079550.1 | InterPro:DUF659 | InterPro:RNaseH-like_sf | ncoils:Coil | PANTHER:PTHR32166 |
| PANTHER:PTHR32166:SF50 | PFAM:PF04937 | SEG:seg | SUPFAM:SSF53098 | UniParc:UPI000276B2F3 | UniProt:K4CNV5 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr8:-:63054573..63057038
Molecular Weight (calculated)
89978.3 Da
IEP (calculated)
8.458
GRAVY (calculated)
-0.305
Length
821 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAPNTTTA LATVEPTGGV GVGVGGGSAD ELNAKAVHKR YEGLVMVRTK AVKGKGAWYW AHLEPILVQN SDTGLPKAVK LRCSLCDAVF SASNPSRTAS
101: EHLKRGTCPN FNSVAKPISS VPPSPSTTVA LSPVSPTPSH QQQQNHRKRS SSGGGGGVRG GSSSCGGNGG GGVGGSVTTS YQVPPLAIVD PSRFAVELAY
201: SPGVSMATSI VTAAGTGGST PGSGGGGAVY GQQHLMLSGG KEDLGALAML EDSVKKLKSP KASPGPTLSK SQIDSALDYL ADWVYECCGS VSFSSLEHPK
301: FKAFLNQVGL PPLSRRDFAG SRLDGKYEEA KVESEAKIRD AMFFQIASDG WKSKNYGHVG EENLVNLSVN LPNGTSVFRR AVFTSGYVHS KYAEEIFMET
401: ISEICGNNLH QCVGIVADKF KAKALRNLED QHRWMVNVSC QYEAFNSLVK DFGKELPLFK NVTENCLKLA NFVNNKSQVR NSFHKYQLQE YGHAGLLRVP
501: LRGYERSDFG PVYTLVEDTL SSARALQLVL LDESYKILCM EEQIARDLEE MMRSPHFWNE LEAVHSLVKL IKSMAQDIQT EKPRVGQCLP LWEELRVKVK
601: DWCSKFHVAE GPVEKVIERR FNKNYHPAWA AAFILDPLYL IRDTSGKYLP PFKCLTPEQE KDVDKLITRL VSRDEAHIAL MELMKWRTEG LDPVYAQAVQ
701: LKQRDPSTGK MKIANPQSSR LVWETHLTEF KSLGKVAVRL IFLRASSCGF KCNWSVLKWV NAHSHSRVGM DKAQKLIFIA AHSKLQRRDC SSDEDKDAEL
801: FSLANSEDDV LNEVFVDTSS V
101: EHLKRGTCPN FNSVAKPISS VPPSPSTTVA LSPVSPTPSH QQQQNHRKRS SSGGGGGVRG GSSSCGGNGG GGVGGSVTTS YQVPPLAIVD PSRFAVELAY
201: SPGVSMATSI VTAAGTGGST PGSGGGGAVY GQQHLMLSGG KEDLGALAML EDSVKKLKSP KASPGPTLSK SQIDSALDYL ADWVYECCGS VSFSSLEHPK
301: FKAFLNQVGL PPLSRRDFAG SRLDGKYEEA KVESEAKIRD AMFFQIASDG WKSKNYGHVG EENLVNLSVN LPNGTSVFRR AVFTSGYVHS KYAEEIFMET
401: ISEICGNNLH QCVGIVADKF KAKALRNLED QHRWMVNVSC QYEAFNSLVK DFGKELPLFK NVTENCLKLA NFVNNKSQVR NSFHKYQLQE YGHAGLLRVP
501: LRGYERSDFG PVYTLVEDTL SSARALQLVL LDESYKILCM EEQIARDLEE MMRSPHFWNE LEAVHSLVKL IKSMAQDIQT EKPRVGQCLP LWEELRVKVK
601: DWCSKFHVAE GPVEKVIERR FNKNYHPAWA AAFILDPLYL IRDTSGKYLP PFKCLTPEQE KDVDKLITRL VSRDEAHIAL MELMKWRTEG LDPVYAQAVQ
701: LKQRDPSTGK MKIANPQSSR LVWETHLTEF KSLGKVAVRL IFLRASSCGF KCNWSVLKWV NAHSHSRVGM DKAQKLIFIA AHSKLQRRDC SSDEDKDAEL
801: FSLANSEDDV LNEVFVDTSS V
001: MATTNAHTAT QQTPPPPPPP PPAPAPPAMD GLTTDELTAK ALNKRYEGLM TVRTKAVKGK GAWYWTHLEP ILVRNTDTGL PKAVKLRCSL CDAVFSASNP
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
101: SRTASEHLKR GTCPNFNSVT PISTITPSPT SSSSSPQTHH RKRNSSGAVT TAIPSRLNPP PIGGSYHVTP ITVVDPSRFC GGELHYSTPP PPQHLMLSGG
201: KDDLGPLAML EDSVKKLKSP KPSQTQSLTR SQIESALDSL SDWVFESCGS VSLSGLEHPK FRAFLTQVGL PIISKRDFAT TRLDLKHEEA RAEAESRIRD
301: AMFFQISSDG WKPGESGESL VNLIVNLPNG TSLYRRAVLV NGAVPSNYAE EVLLETVKGI CGNSPQRCVG IVSDKFKTKA LRNLESQHQW MVNLSCQFQG
401: LNSLIKDFVK ELPLFKSVSQ NCVRLAKFIN NTAQIRNAHC KYQLQEHGES IMLRLPLHCY YDDERRSCSS SSSGSNKVCF YEPLFNLLED VLSSARAIQL
501: VVHDDACKVV LMEDHMAREV REMVGDEGFW NEVEAVHALI KLVKEMARRI EEEKLLVGQC LPLWDELRAK VKDWDSKFNV GEGHVEKVVE RRFKKSYHPA
601: WAAAFILDPL YLIRDSSGKY LPPFKCLSPE QEKDVDKLIT RLVSRDEAHI ALMELMKWRT EGLDPMYARA VQMKERDPVS GKMRIANPQS SRLVWETYLS
701: EFRSLGKVAV RLIFLHATTG GFKCNSSLLK WVNSNGRSHA AVDRAQKLIF ISANSKFERR DFSNEEDRDA ELLAMANGDD HMLNDVLVDT SSV
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (so /.../NCBI BLink). [Source:TAIR;Acc:AT1G12380]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.